Structural Similarities for the Entities in PDB 1DEE

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C,E

Description: IGM RF 2A2 protein | Length: 214

No structure alignment results are available for 1DEE.A, 1DEE.C, 1DEE.E explicitly.

These chains are represented by chain 4NZU.L which has more than 90% sequence identity.

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View how chain 1DEE.E compares with the representative chain PDP:4NZULa. Select a comparison method:


Entity #2 | Chains B,D,F

Description: IGM RF 2A2 protein | Length: 223

No structure alignment results are available for 1DEE.B, 1DEE.D, 1DEE.F explicitly.

These chains are represented by chain 4NZU.L which has more than 50% sequence identity.

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View how chain 1DEE.F compares with the representative chain PDP:4NZULa. Select a comparison method:


Entity #3 | Chains G,H

Description: IMMUNOGLOBULIN G BINDING PROTEIN A protein | Length: 54

No structure alignment results are available for 1DEE.G, 1DEE.H explicitly.

These chains are represented by chain 4NPD.A which has more than 70% sequence identity.

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View how chain 1DEE.H compares with the representative chain PDP:4NPDAa. Select a comparison method:


References