Structural Similarities for the Entities in PDB 1DE9

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains U,X

Description: 5'-d(*CP*TP*AP*C)-3' dna | Length: 4

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains V,Y

Description: 5'-d(P*(3DR)P*GP*AP*TP*C)-3' dna | Length: 5

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains W,Z

Description: 5'-d(*GP*AP*TP*CP*GP*GP*TP*AP*G)-3' dna | Length: 9

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains A,B

Description: MAJOR APURINIC/APYRIMIDINIC ENDONUCLEASE protein | Length: 276

No structure alignment results are available for 1DE9.A, 1DE9.B explicitly.

These chains are represented by chain 3G91.A which has more than 40% sequence identity.

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View how chain 1DE9.B compares with the representative chain PDP:3G91Aa. Select a comparison method:


References