Structural Similarities for the Entities in PDB 1DDL

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jan-10-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains D

Description: RNA (5'-R(P*UP*UP*UP*UP*UP*UP*U)-3') rna | Length: 7

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains E

Description: RNA (5'-R(P*UP*U)-3') rna | Length: 2

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains A,B,C

Description: DESMODIUM YELLOW MOTTLE VIRUS protein | Length: 188

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References