1DDH

MHC CLASS I H-2DD HEAVY CHAIN COMPLEXED WITH BETA-2 MICROGLOBULIN AND AN IMMUNODOMINANT PEPTIDE P18-I10 FROM THE HUMAN IMMUNODEFICIENCY VIRUS ENVELOPE GLYCOPROTEIN 120



Structural Similarities for the Entities in PDB 1DDH

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A

Description: MHC CLASS I H-2DD HEAVY CHAIN protein | Length: 274

No structure alignment results are available for 1DDH.A explicitly.

It is represented by chain 1K5N.a which has more than 70% sequence identity.

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Entity #2 | Chains B

Description: BETA-2 MICROGLOBULIN protein | Length: 99

No structure alignment results are available for 1DDH.B explicitly.

It is represented by chain 1K5N.b which has more than 70% sequence identity.

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Entity #3 | Chains P

Description: HUMAN IMMUNODEFICIENCY VIRUS ENVELOPE GLYCOPROTEIN 120 protein | Length: 10

This entity is too short to be considered for the all vs. all structure alignments.


References