Structural Similarities for the Entities in PDB 1DAN

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Mar-14-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains L

Description: BLOOD COAGULATION FACTOR VIIA light chain protein | Length: 152

No structure alignment results are available for 1DAN.L explicitly.

It is represented by chain 4YLQ.L which is 100% sequence identical.

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View how chain 1DAN.L compares with the representative chain PDP:4YLQLa. Select a comparison method:


Entity #2 | Chains H

Description: BLOOD COAGULATION FACTOR VIIA heavy chain protein | Length: 254

No structure alignment results are available for 1DAN.H explicitly.

It is represented by chain 4I8H.A which has more than 40% sequence identity.

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Entity #3 | Chains T

Description: SOLUBLE TISSUE FACTOR protein | Length: 80

No structure alignment results are available for 1DAN.T explicitly.

It is represented by chain 2C4F.T which is 100% sequence identical.

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Entity #4 | Chains U

Description: SOLUBLE TISSUE FACTOR protein | Length: 121

No structure alignment results are available for 1DAN.U explicitly.

It is represented by chain 2C4F.u which has more than 95% sequence identity.

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View how chain 1DAN.U compares with the representative chain d2c4fu1. Select a comparison method:


References