Structural Similarities for the Entities in PDB 1D9K

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,E

Description: T-CELL RECEPTOR D10 (ALPHA CHAIN) protein | Length: 110

No structure alignment results are available for 1D9K.A, 1D9K.E explicitly.

These chains are represented by chain 4UNU.A which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 1D9K.E compares with the representative chain PDP:4UNUAa. Select a comparison method:


Entity #2 | Chains B,F

Description: T-CELL RECEPTOR D10 (BETA CHAIN) protein | Length: 112

No structure alignment results are available for 1D9K.B, 1D9K.F explicitly.

These chains are represented by chain 2AQ2.a which has more than 90% sequence identity.

Show structure comparison results

  Loading...

View how chain 1D9K.F compares with the representative chain d2aq2a1. Select a comparison method:


Entity #3 | Chains C,G

Description: MHC I-AK A CHAIN (ALPHA CHAIN) protein | Length: 183

No structure alignment results are available for 1D9K.C, 1D9K.G explicitly.

These chains are represented by chain 4X5W.A which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1D9K.G compares with the representative chain PDP:4X5WAa. Select a comparison method:


Entity #4 | Chains D,H

Description: MHC I-AK B CHAIN (BETA CHAIN) protein | Length: 188

No structure alignment results are available for 1D9K.D, 1D9K.H explicitly.

These chains are represented by chain 4X5W.B which has more than 70% sequence identity.

Show structure comparison results

  Loading...

View how chain 1D9K.H compares with the representative chain PDP:4X5WBa. Select a comparison method:


Entity #5 | Chains P,Q

Description: CONALBUMIN PEPTIDE protein | Length: 16

This entity is too short to be considered for the all vs. all structure alignments.


References