Structural Similarities for the Entities in PDB 1CVJ

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Mar-28-2017

Info & Help Documentation

A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains M,N,O,P,Q,R,S,T

Description: 5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3' rna | Length: 11

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.

Entity #2 | Chains A,B,C,D,E,F,G,H

Description: POLYADENYLATE BINDING PROTEIN 1 protein | Length: 190