Structural Similarities for the Entities in PDB 1CMA

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains C

Description: DNA (5'-D(*TP*TP*AP*GP*AP*CP*GP*TP*CP*T)-3') dna | Length: 10

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains D

Description: DNA (5'-D(*AP*GP*AP*CP*GP*TP*CP*TP*A)-3') dna | Length: 9

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains A,B

Description: PROTEIN (MET REPRESSOR) protein | Length: 104

No structure alignment results are available for 1CMA.A, 1CMA.B explicitly.

These chains are represented by chain 1CMC.a which is 100% sequence identical.

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References