Structural Similarities for the Entities in PDB 1CDL

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D

Description: CALMODULIN protein | Length: 147

No structure alignment results are available for 1CDL.A, 1CDL.B, 1CDL.C, 1CDL.D explicitly.

These chains are represented by chain 1EXR.a which has more than 90% sequence identity.

Show structure comparison results

  Loading...

View how chain 1CDL.D compares with the representative chain d1exra_. Select a comparison method:


Entity #2 | Chains E,F,G,H

Description: CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE II ALPHA CHAIN protein | Length: 20

No structure alignment results are available for 1CDL.E, 1CDL.F, 1CDL.G, 1CDL.H explicitly.

These chains are represented by chain 1QTX.B which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1CDL.H compares with the representative chain PDP:1QTXB_. Select a comparison method:


References