Structural Similarities for the Entities in PDB 1CD3

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains 1,2,3,4

Description: PROTEIN (SCAFFOLDING PROTEIN GPD) protein | Length: 152

No structure alignment results are available for 1CD3.1, 1CD3.2, 1CD3.3, 1CD3.4 explicitly.

These chains are represented by chain 1TX9.a which is 100% sequence identical.

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View how chain 1CD3.4 compares with the representative chain d1tx9a1. Select a comparison method:


Entity #2 | Chains F

Description: PROTEIN (CAPSID PROTEIN GPF) protein | Length: 426

No structure alignment results are available for 1CD3.F explicitly.

It is represented by chain 2BPA.1 which has more than 95% sequence identity.

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View how chain 1CD3.F compares with the representative chain d2bpa1_. Select a comparison method:


Entity #3 | Chains G

Description: PROTEIN (SPIKE PROTEIN GPG) protein | Length: 175

No structure alignment results are available for 1CD3.G explicitly.

It is represented by chain 2BPA.2 which is 100% sequence identical.

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View how chain 1CD3.G compares with the representative chain d2bpa2_. Select a comparison method:


Entity #4 | Chains B

Description: PROTEIN (SCAFFOLDING PROTEIN GPB) protein | Length: 120

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References