Structural Similarities for the Entities in PDB 1CA0

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A,F

Description: BOVINE CHYMOTRYPSIN protein | Length: 13

This entity is too short to be considered for the all vs. all structure alignments.


Entity #2 | Chains B,G

Description: BOVINE CHYMOTRYPSIN protein | Length: 131

No structure alignment results are available for 1CA0.B, 1CA0.G explicitly.

These chains are represented by chain 1YPH.C which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1CA0.G compares with the representative chain PDP:1YPHCa. Select a comparison method:


Entity #3 | Chains C,H

Description: BOVINE CHYMOTRYPSIN protein | Length: 97

No structure alignment results are available for 1CA0.C, 1CA0.H explicitly.

These chains are represented by chain 1YPH.E which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1CA0.H compares with the representative chain PDP:1YPHEa. Select a comparison method:


Entity #4 | Chains D,I

Description: PROTEASE INHIBITOR DOMAIN OF ALZHEIMER'S AMYLOID BETA-PROTEIN PRECURSOR protein | Length: 54

No structure alignment results are available for 1CA0.D, 1CA0.I explicitly.

These chains are represented by chain 1G6X.a which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 1CA0.I compares with the representative chain d1g6xa_. Select a comparison method:


References