Structural Similarities for the Entities in PDB 1C9B

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Mar-28-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains C,G,K,O,S

Description: ADMLP TATA-BOX DNA CONTAINING IIB RECOGNITION ELEMENT dna | Length: 18

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains D,H,L,P,T

Description: ADMLP TATA-BOX DNA CONTAINING IIB RECOGNITION ELEMENT dna | Length: 18

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains A,E,I,M,Q

Description: GENERAL TRANSCRIPTION FACTOR IIB protein | Length: 207

No structure alignment results are available for 1C9B.A, 1C9B.E, 1C9B.I, 1C9B.M, 1C9B.Q explicitly.

These chains are represented by chain 1VOL.a which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 1C9B.Q compares with the representative chain d1vola1. Select a comparison method:


Entity #4 | Chains B,F,J,N,R

Description: TATA BOX BINDING PROTEIN protein | Length: 180

No structure alignment results are available for 1C9B.B, 1C9B.F, 1C9B.J, 1C9B.N, 1C9B.R explicitly.

These chains are represented by chain 1QNA.a which has more than 70% sequence identity.

Show structure comparison results

  Loading...

View how chain 1C9B.R compares with the representative chain d1qnaa1. Select a comparison method:


References