Structural Similarities for the Entities in PDB 1C04

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jul-19-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains E

Description: 23S RRNA FRAGMENT rna | Length: 58

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains F

Description: 23S RRNA FRAGMENT rna | Length: 29

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains A

Description: RIBOSOMAL PROTEIN L2 protein | Length: 137

No structure alignment results are available for 1C04.A explicitly.

It is represented by chain 1RL2.a which is 100% sequence identical.

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Entity #4 | Chains B

Description: RIBOSOMAL PROTEIN L6 protein | Length: 177

No structure alignment results are available for 1C04.B explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #5 | Chains C

Description: RIBOSOMAL PROTEIN L11 protein | Length: 67

No structure alignment results are available for 1C04.C explicitly.

It is represented by chain 3G6E.I which has more than 40% sequence identity.

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Entity #6 | Chains D

Description: RIBOSOMAL PROTEIN L14 protein | Length: 122

No structure alignment results are available for 1C04.D explicitly.

It is represented by chain 1WHI.a which is 100% sequence identical.

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References