Structural Similarities for the Entities in PDB 1BMV

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Aug-23-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains M

Description: RNA (5'-R(*GP*GP*UP*CP*AP*AP*AP*AP*UP*GP*C)-3') rna | Length: 11

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains 1

Description: PROTEIN (ICOSAHEDRAL VIRUS - A DOMAIN) protein | Length: 198

No structure alignment results are available for 1BMV.1 explicitly.

It is represented by chain 1PGL.1 which is 100% sequence identical.

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View how chain 1BMV.1 compares with the representative chain d1pgl11. Select a comparison method:


Entity #3 | Chains 2

Description: PROTEIN (ICOSAHEDRAL VIRUS - B AND C DOMAIN) protein | Length: 374

No structure alignment results are available for 1BMV.2 explicitly.

It is represented by chain 1PGL.2 which is 100% sequence identical.

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View how chain 1BMV.2 compares with the representative chain d1pgl21. Select a comparison method:


References