The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].
To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].
Currently viewing only significant results (P-value < 0.001). Show all available results.
Cluster data are up-to-date as of: Sep-27-2016
The table is sorting is by P-value by default. Clicking on the column header will change the sort order. Select the Filter Results icon to apply other filtering criteria.
A detailed description of the procedure for the all vs. all alignments is available.
Description: RNA (5'-R(*GP*GP*UP*CP*AP*AP*AP*AP*UP*GP*C)-3') rna | Length: 11
This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.
Description: PROTEIN (ICOSAHEDRAL VIRUS - A DOMAIN) protein | Length: 198
It is represented by chain 1PGL.1 which is 100% sequence identical.
View how chain 1BMV.1 compares with the representative chain d1pgl11. Select a comparison method:
Description: PROTEIN (ICOSAHEDRAL VIRUS - B AND C DOMAIN) protein | Length: 374
It is represented by chain 1PGL.2 which is 100% sequence identical.
View how chain 1BMV.2 compares with the representative chain d1pgl21. Select a comparison method: