Structural Similarities for the Entities in PDB 1BMF

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-21-2016

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C

Description: BOVINE MITOCHONDRIAL F1-ATPASE protein | Length: 510

No structure alignment results are available for 1BMF.A, 1BMF.B, 1BMF.C explicitly.

These chains are represented by chain 2JDI.a which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1BMF.C compares with the representative chain d2jdia1. Select a comparison method:


Entity #2 | Chains D,E,F

Description: BOVINE MITOCHONDRIAL F1-ATPASE protein | Length: 482

No structure alignment results are available for 1BMF.D, 1BMF.E, 1BMF.F explicitly.

These chains are represented by chain 2JDI.d which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1BMF.F compares with the representative chain d2jdid1. Select a comparison method:


Entity #3 | Chains G

Description: BOVINE MITOCHONDRIAL F1-ATPASE protein | Length: 272

No structure alignment results are available for 1BMF.G explicitly.

It is represented by chain 2JDI.g which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1BMF.G compares with the representative chain d2jdig1. Select a comparison method:


References