Structural Similarities for the Entities in PDB 1BJQ

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Apr-26-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D,E,F,G,H

Description: LECTIN protein | Length: 253

No structure alignment results are available for 1BJQ.A, 1BJQ.B, 1BJQ.C, 1BJQ.D, 1BJQ.E, 1BJQ.F, 1BJQ.G, 1BJQ.H explicitly.

These chains are represented by chain 4U36.A which has more than 50% sequence identity.

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View how chain 1BJQ.H compares with the representative chain PDP:4U36Aa. Select a comparison method:


References