Structural Similarities for the Entities in PDB 1BBR

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Mar-28-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains J,L,M

Description: EPSILON-THROMBIN protein | Length: 49

No structure alignment results are available for 1BBR.J, 1BBR.L, 1BBR.M explicitly.

These chains are represented by chain 3BEI.A which has more than 50% sequence identity.

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View how chain 1BBR.M compares with the representative chain PDP:3BEIA_. Select a comparison method:


Entity #2 | Chains H

Description: EPSILON-THROMBIN protein | Length: 150

No structure alignment results are available for 1BBR.H explicitly.

It is represented by chain 3PO1.B which has more than 70% sequence identity.

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View how chain 1BBR.H compares with the representative chain PDP:3PO1Ba. Select a comparison method:


Entity #3 | Chains E

Description: EPSILON-THROMBIN protein | Length: 109

No structure alignment results are available for 1BBR.E explicitly.

It is represented by chain 1YPH.E which has more than 40% sequence identity.

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Entity #4 | Chains F,G,I

Description: FIBRINOGEN ALPHA/ALPHA-E CHAIN PRECURSOR protein | Length: 11

This entity is too short to be considered for the all vs. all structure alignments.


Entity #5 | Chains K,N

Description: EPSILON-THROMBIN protein | Length: 259

No structure alignment results are available for 1BBR.K, 1BBR.N explicitly.

These chains are represented by chain 4I8H.A which has more than 40% sequence identity.

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References