Structural Similarities for the Entities in PDB 1AWC

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains D

Description: DNA (5'-D(*AP*AP*(BRU)P*GP*AP*CP*CP*GP*GP*AP*AP*GP*TP*AP*(CBR)P*AP*CP*(CBR)P*GP*GP*A)-3') dna | Length: 21

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains E

Description: DNA (5'-D(*TP*TP*CP*CP*GP*GP*(BRU)P*GP*(BRU)P*AP*CP*TP*TP*CP*CP*GP*GP*TP*CP*AP*T)-3') dna | Length: 21

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains A

Description: PROTEIN (GA BINDING PROTEIN ALPHA) protein | Length: 110

No structure alignment results are available for 1AWC.A explicitly.

It is represented by chain 4LG0.B which has more than 50% sequence identity.

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View how chain 1AWC.A compares with the representative chain PDP:4LG0Ba. Select a comparison method:


Entity #4 | Chains B

Description: PROTEIN (GA BINDING PROTEIN BETA 1) protein | Length: 153

No structure alignment results are available for 1AWC.B explicitly.

It is represented by chain 4DUI.A which has more than 50% sequence identity.

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View how chain 1AWC.B compares with the representative chain PDP:4DUIAa. Select a comparison method:


References