Structural Similarities for the Entities in PDB 1AQD

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,D,G,J

Description: HLA-DR1 CLASS II HISTOCOMPATIBILITY PROTEIN protein | Length: 192

No structure alignment results are available for 1AQD.A, 1AQD.D, 1AQD.G, 1AQD.J explicitly.

These chains are represented by chain 4X5W.A which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1AQD.J compares with the representative chain PDP:4X5WAa. Select a comparison method:


Entity #2 | Chains B,E,H,K

Description: HLA-DR1 CLASS II HISTOCOMPATIBILITY PROTEIN protein | Length: 198

No structure alignment results are available for 1AQD.B, 1AQD.E, 1AQD.H, 1AQD.K explicitly.

These chains are represented by chain 4X5W.B which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1AQD.K compares with the representative chain PDP:4X5WBa. Select a comparison method:


Entity #3 | Chains C,F,I,L

Description: HLA-A2 protein | Length: 15

This entity is too short to be considered for the all vs. all structure alignments.


References