Structural Similarities for the Entities in PDB 1AOI

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-20-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains I,J

Description: PALINDROMIC 146 BP DNA REPEAT 8/9 FROM HUMAN X-CHROMOSOME ALPHA SATELLITE DNA dna | Length: 146

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains A,E

Description: HISTONE H3 protein | Length: 116

No structure alignment results are available for 1AOI.A, 1AOI.E explicitly.

These chains are represented by chain 2YFV.A which has more than 50% sequence identity.

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View how chain 1AOI.E compares with the representative chain PDP:2YFVAa. Select a comparison method:


Entity #3 | Chains B,F

Description: HISTONE H4 protein | Length: 87

No structure alignment results are available for 1AOI.B, 1AOI.F explicitly.

These chains are represented by chain 2HUE.c which is 100% sequence identical.

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View how chain 1AOI.F compares with the representative chain d2huec1. Select a comparison method:


Entity #4 | Chains C,G

Description: HISTONE H2A protein | Length: 116

No structure alignment results are available for 1AOI.C, 1AOI.G explicitly.

These chains are represented by chain 4CAY.A which has more than 50% sequence identity.

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View how chain 1AOI.G compares with the representative chain PDP:4CAYAa. Select a comparison method:


Entity #5 | Chains D,H

Description: HISTONE H2B protein | Length: 99

No structure alignment results are available for 1AOI.D, 1AOI.H explicitly.

These chains are represented by chain 4CAY.B which has more than 95% sequence identity.

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View how chain 1AOI.H compares with the representative chain PDP:4CAYBa. Select a comparison method:


References