Structural Similarities for the Entities in PDB 1AFV

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B

Description: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 CAPSID PROTEIN protein | Length: 151

No structure alignment results are available for 1AFV.A, 1AFV.B explicitly.

These chains are represented by chain 2WLV.A which has more than 50% sequence identity.

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View how chain 1AFV.B compares with the representative chain PDP:2WLVAa. Select a comparison method:


Entity #2 | Chains L,M

Description: ANTIBODY FAB25.3 FRAGMENT (LIGHT CHAIN) protein | Length: 217

No structure alignment results are available for 1AFV.L, 1AFV.M explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

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View how chain 1AFV.M compares with the representative chain PDP:4NZULa. Select a comparison method:


Entity #3 | Chains H,K

Description: ANTIBODY FAB25.3 FRAGMENT (HEAVY CHAIN) protein | Length: 220

No structure alignment results are available for 1AFV.H, 1AFV.K explicitly.

These chains are represented by chain 4NZU.L which has more than 50% sequence identity.

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View how chain 1AFV.K compares with the representative chain PDP:4NZULa. Select a comparison method:


References