The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].
To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].
Currently viewing only significant results (P-value < 0.001). Show all available results.
Cluster data are up-to-date as of: Jun-20-2017
The table is sorting is by P-value by default. Clicking on the column header will change the sort order. Select the Filter Results icon to apply other filtering criteria.
A detailed description of the procedure for the all vs. all alignments is available.
Description: SL3 STEM-LOOP RNA rna | Length: 20
This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.
Description: NUCLEOCAPSID PROTEIN protein | Length: 55
It is represented by chain 5I1R.A which has more than 90% sequence identity.
View how chain 1A1T.A compares with the representative chain PDP:5I1RA_. Select a comparison method: