Structural Similarities for the Entities in PDB 12E8

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains L,M

Description: IGG1-KAPPA 2E8 FAB (LIGHT CHAIN) protein | Length: 214

No structure alignment results are available for 12E8.L, 12E8.M explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

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View how chain 12E8.M compares with the representative chain PDP:4NZULa. Select a comparison method:


Entity #2 | Chains H,P

Description: IGG1-KAPPA 2E8 FAB (HEAVY CHAIN) protein | Length: 221

No structure alignment results are available for 12E8.H, 12E8.P explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

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View how chain 12E8.P compares with the representative chain PDP:4NZULa. Select a comparison method:


References