Sequence Similarity Clusters for the Entities in PDB 9ICW

Entity #1 | Chains: T
DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P
DNA (5'-D(*CP*AP*GP*AP*TP*G)-3') dna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7)) protein, length: 335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 152 280 83
95 % 181 322 80
90 % 181 322 83
70 % 181 322 100
50 % 181 322 140
40 % 181 322 152
30 % 275 452 108

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures