Sequence Similarity Clusters for the Entities in PDB 7ICE

Entity #1 | Chains: T
DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P
DNA (5'-D(P*CP*AP*GP*AP*TP*G)-3') dna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (DNA POLYMERASE BETA) protein, length: 335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 206 317 90
95 % 230 351 76 Flexibility: Medium
Max RMSD: 14.0, Avg RMSD: 3.0
PDBFlex
90 % 230 351 81
70 % 230 351 100
50 % 230 351 133
40 % 230 351 151
30 % 330 481 115

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures