6RXV

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B2


Sequence Similarity Clusters for the Entities in PDB 6RXV

Entity #1 | Chains: UA
Periodic tryptophan protein 2-like protein protein, length: 904 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13532
95 % 3 7 13358
90 % 3 7 13160
70 % 3 7 12494
50 % 3 11 7412
40 % 3 11 7142
30 % 3 11 6718
Entity #10 | Chains: UM
Utp13 protein, length: 912 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12605
95 % 3 7 12615
90 % 3 7 12417
70 % 3 7 11813
50 % 3 7 10803
40 % 3 7 10165
30 % 3 7 9398
Entity #11 | Chains: UN
Utp14 protein, length: 938 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13358
95 % 3 7 13033
90 % 3 7 12839
70 % 3 7 12189
50 % 3 7 11148
40 % 3 7 10489
30 % 3 7 9683
Entity #12 | Chains: UO
Utp15 protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13115
95 % 3 7 12446
90 % 3 7 12254
70 % 3 7 11790
50 % 3 7 10781
40 % 3 7 10147
30 % 3 9 7735
Entity #13 | Chains: UQ
Utp17 protein, length: 960 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12887
95 % 3 7 12906
90 % 3 7 12709
70 % 3 7 12063
50 % 3 7 11289
40 % 3 7 10614
30 % 3 7 9799
Entity #14 | Chains: UR
Utp18 protein, length: 618 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12885
95 % 3 7 13196
90 % 3 7 12995
70 % 3 7 12325
50 % 3 7 11287
40 % 3 7 10612
30 % 3 11 6608
Entity #15 | Chains: UU
Utp21 protein, length: 1049 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12927
95 % 3 7 12895
90 % 3 7 13103
70 % 3 7 12059
50 % 3 7 11036
40 % 3 7 10367
30 % 3 7 9586
Entity #16 | Chains: UX
Utp24 protein, length: 193 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 11044
95 % 3 8 11499
90 % 3 8 11336
70 % 3 8 10860
50 % 3 12 6444
40 % 3 12 6232
30 % 3 12 5922
Entity #17 | Chains: UZ
Utp30 protein, length: 391 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12886
95 % 3 7 13197
90 % 3 7 12996
70 % 3 7 12326
50 % 3 7 11288
40 % 3 7 10613
30 % 3 7 9798
Entity #18 | Chains: CA,CB
Nop1 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5171
95 % 3 7 5801
90 % 3 7 5838
70 % 3 7 5772
50 % 3 11 3452
40 % 3 11 3437
30 % 3 11 3374
Entity #19 | Chains: CC
Nop56 protein, length: 523 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13114
95 % 3 7 12590
90 % 3 7 12393
70 % 3 7 11789
50 % 3 11 7090
40 % 3 14 5340
30 % 3 14 5112
Entity #2 | Chains: UB
Utp2 protein, length: 907 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13059
95 % 3 7 12941
90 % 3 7 12286
70 % 3 7 11699
50 % 3 7 10691
40 % 3 7 10062
30 % 3 7 9313
Entity #20 | Chains: CD
Nop58 protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13536
95 % 3 7 13363
90 % 3 7 13167
70 % 3 7 12500
50 % 3 7 11077
40 % 3 7 10756
30 % 3 7 9922
Entity #21 | Chains: CE,CF
Snu13 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5397
95 % 3 7 5883
90 % 3 7 6212
70 % 3 7 6126
50 % 12 34 1341
40 % 13 35 1334
30 % 12 34 1429
Entity #22 | Chains: CG
Rrp9 protein, length: 630 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13535
95 % 3 7 13362
90 % 3 7 13166
70 % 3 7 12499
50 % 3 7 11447
40 % 3 7 10755
30 % 3 7 9921
Entity #23 | Chains: CH
RNA 3'-terminal phosphate cyclase-like protein protein, length: 411 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13322
95 % 3 7 12975
90 % 3 7 12778
70 % 3 7 12125
50 % 3 7 11084
40 % 3 7 10421
30 % 3 7 9631
Entity #24 | Chains: CI
Bms1 protein, length: 1163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13323
95 % 3 7 12976
90 % 3 7 12779
70 % 3 7 12126
50 % 3 7 11085
40 % 3 11 7152
30 % 3 11 6724
Entity #25 | Chains: CJ
Imp3 protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 12372
95 % 3 8 11349
90 % 3 8 12020
70 % 3 8 10356
50 % 3 12 7014
40 % 3 12 6765
30 % 3 12 6364
Entity #26 | Chains: CK
Imp4 protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 12084
95 % 3 8 10930
90 % 3 8 11598
70 % 3 8 11100
50 % 3 11 7389
40 % 3 11 6975
30 % 3 11 6563
Entity #27 | Chains: CL
Mpp10 protein, length: 785 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13324
95 % 3 7 12698
90 % 3 7 12495
70 % 3 7 12127
50 % 3 7 11086
40 % 3 7 10226
30 % 3 7 9632
Entity #28 | Chains: CM
Sof1 protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13401
95 % 3 7 12467
90 % 3 7 12924
70 % 3 7 12264
50 % 3 7 10671
40 % 3 9 8026
30 % 3 9 7576
Entity #29 | Chains: CN,CO
Emg1 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5298
95 % 3 7 5995
90 % 3 7 6036
70 % 8 17 2321
50 % 8 17 2358
40 % 8 17 2382
30 % 8 17 2378
Entity #3 | Chains: UC
Utp3 protein, length: 648 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13554
95 % 3 7 13400
90 % 3 7 13208
70 % 3 7 12529
50 % 3 7 11480
40 % 3 7 10786
30 % 3 7 9948
Entity #30 | Chains: CP
KRR1 small subunit processome component protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 8906
95 % 3 8 9653
90 % 3 8 9583
70 % 3 11 6991
50 % 3 11 6638
40 % 3 11 6430
30 % 3 11 6080
Entity #31 | Chains: CQ
Pre-rRNA-processing protein PNO1 protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12723
95 % 3 7 12896
90 % 3 7 12700
70 % 3 7 12060
50 % 3 7 11037
40 % 3 7 10368
30 % 3 7 9587
Entity #32 | Chains: CR,CS
Kre33 protein, length: 1073 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 4431
95 % 3 8 5147
90 % 3 8 5368
70 % 3 8 5304
50 % 3 8 4959
40 % 3 8 4988
30 % 3 8 4806
Entity #33 | Chains: CT
Fcf2 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13147
95 % 3 7 12639
90 % 3 7 12441
70 % 3 7 11831
50 % 3 7 10816
40 % 3 7 10176
30 % 3 7 9407
Entity #34 | Chains: Ca
40S ribosomal protein S1 protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 17876
95 % 3 5 16783
90 % 3 5 16482
70 % 46 86 468
50 % 51 142 348
40 % 53 149 347
30 % 53 149 360
Entity #35 | Chains: Cb
40S ribosomal protein S4 protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 18276
95 % 2 5 17420
90 % 2 5 17113
70 % 50 167 264
50 % 52 178 257
40 % 52 182 261
30 % 52 187 262
Entity #36 | Chains: Cc
40S ribosomal protein s5-like protein protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13146
95 % 3 7 12720
90 % 3 7 12525
70 % 8 93 630
50 % 54 188 229
40 % 54 188 239
30 % 54 188 252
Entity #37 | Chains: Cd
40S ribosomal protein S6 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 17891
95 % 2 5 16808
90 % 2 5 16505
70 % 7 83 709
50 % 51 169 299
40 % 51 174 302
30 % 51 174 324
Entity #38 | Chains: Ce
40S ribosomal protein S7 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13228
95 % 3 7 12785
90 % 3 7 12593
70 % 3 7 11963
50 % 51 175 279
40 % 51 175 295
30 % 53 178 294
Entity #39 | Chains: Cf
40S ribosomal protein S8 protein, length: 202 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 19336
95 % 2 5 17209
90 % 2 5 16897
70 % 45 88 456
50 % 52 177 260
40 % 52 181 262
30 % 52 181 284
Entity #4 | Chains: UD
Utp4 protein, length: 884 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 9517
95 % 4 8 10050
90 % 4 8 9957
70 % 4 8 9620
50 % 4 8 8966
40 % 4 8 8578
30 % 4 8 8008
Entity #40 | Chains: Cg
40S ribosomal protein s9-like protein protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13382
95 % 3 7 13068
90 % 3 7 12875
70 % 52 172 256
50 % 54 187 230
40 % 54 191 235
30 % 54 191 248
Entity #41 | Chains: Ch
40S ribosomal protein S13-like protein protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13227
95 % 3 7 12784
90 % 3 7 12592
70 % 52 177 250
50 % 54 184 235
40 % 54 189 236
30 % 54 189 251
Entity #42 | Chains: Ci
40S ribosomal protein S14-like protein protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13190
95 % 3 7 12726
90 % 7 73 786
70 % 54 185 218
50 % 54 186 231
40 % 54 186 243
30 % 54 186 263
Entity #43 | Chains: Cj
40S ribosomal protein S16-like protein protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12815
95 % 3 7 13054
90 % 3 7 12863
70 % 3 7 12210
50 % 54 179 250
40 % 54 183 252
30 % 54 184 266
Entity #44 | Chains: Ck
40S ribosomal protein S11-like protein protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 18215
95 % 2 5 17336
90 % 2 5 17016
70 % 46 90 442
50 % 53 184 234
40 % 53 184 246
30 % 53 184 265
Entity #45 | Chains: Cm
40S ribosomal protein S22-like protein protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13519
95 % 3 7 13339
90 % 3 7 13142
70 % 53 188 225
50 % 55 190 228
40 % 56 195 231
30 % 414 752 22
Entity #46 | Chains: Cn
40S ribosomal protein s23-like protein protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12599
95 % 3 7 12786
90 % 3 7 12594
70 % 54 191 208
50 % 54 197 219
40 % 54 197 228
30 % 54 197 244
Entity #47 | Chains: Co
40S ribosomal protein S24 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 19878
95 % 2 5 17924
90 % 2 5 17606
70 % 2 5 16580
50 % 50 179 266
40 % 50 179 281
30 % 50 179 307
Entity #48 | Chains: Cp
40S ribosomal protein S28-like protein protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13120
95 % 3 7 12597
90 % 3 7 12400
70 % 52 178 247
50 % 54 185 232
40 % 54 186 241
30 % 54 186 257
Entity #49 | Chains: CU
Faf1 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13121
95 % 3 7 12598
90 % 3 7 12401
70 % 3 7 11798
50 % 3 7 10788
40 % 3 7 10152
30 % 3 7 9388
Entity #5 | Chains: UF
Utp6 protein, length: 414 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12604
95 % 3 7 12614
90 % 3 7 12416
70 % 3 7 11812
50 % 3 7 10802
40 % 3 7 10164
30 % 3 7 9397
Entity #50 | Chains: C1
35S ribosomal RNA rna, length: 2352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #51 | Chains: C2
U3 snoRNA rna, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #52 | Chains: UV
U3 small nucleolar RNA-associated protein 22 protein, length: 1171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 25369
95 % 1 4 25835
90 % 1 4 24992
70 % 1 4 22785
50 % 1 4 20064
40 % 1 4 18365
30 % 1 4 16467
Entity #53 | Chains: CV
Rrp7 protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 27378
95 % 1 4 25193
90 % 1 4 24411
70 % 1 4 22275
50 % 1 4 19664
40 % 1 4 18015
30 % 1 4 16163
Entity #54 | Chains: CW
Ribosome biogenesis protein ENP2 protein, length: 668 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 30279
95 % 2 4 25836
90 % 2 4 24993
70 % 2 4 22786
50 % 2 4 20065
40 % 2 4 18366
30 % 2 4 16468
Entity #55 | Chains: UT
Utp20 protein, length: 2612 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 29670
95 % 2 4 21246
90 % 2 4 20168
70 % 2 4 18654
50 % 2 4 17035
40 % 2 4 16710
30 % 2 4 13901
Entity #56 | Chains: UH
Utp8 protein, length: 930 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 16303
95 % 3 6 14328
90 % 3 6 14112
70 % 3 6 13315
50 % 3 6 12148
40 % 3 6 12055
30 % 3 6 10488
Entity #57 | Chains: UE,UI
Utp5 protein, length: 410 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 6475
95 % 3 6 7730
90 % 3 6 7693
70 % 3 6 7508
50 % 3 6 7068
40 % 3 6 6808
30 % 3 6 6407
Entity #58 | Chains: US
Noc4 protein, length: 549 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 14965
95 % 3 6 16566
90 % 3 6 15355
70 % 3 6 14397
50 % 3 6 13760
40 % 3 6 12803
30 % 3 6 11173
Entity #59 | Chains: Cl
Rps18 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 16136
95 % 3 6 15208
90 % 3 6 14967
70 % 52 170 259
50 % 54 179 253
40 % 54 184 248
30 % 54 185 264
Entity #6 | Chains: UG
Utp7 protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13085
95 % 3 7 13296
90 % 3 7 13093
70 % 3 7 12425
50 % 3 7 11381
40 % 3 9 8094
30 % 3 9 7585
Entity #60 | Chains: CX
Enp1 protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 15738
95 % 3 6 16645
90 % 3 6 16343
70 % 3 6 15368
50 % 3 6 12593
40 % 3 6 12853
30 % 3 14 5387
Entity #61 | Chains: CY
U3 small nucleolar ribonucleoprotein protein lcp5-like protein protein, length: 381 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 34526
95 % 2 3 27175
90 % 2 3 26266
70 % 2 3 23882
50 % 2 3 20965
40 % 2 3 19170
30 % 2 3 17208
Entity #62 | Chains: CZ
Bfr2 protein, length: 609 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 25546
95 % 2 4 18975
90 % 2 4 18586
70 % 2 4 17254
50 % 2 4 15533
40 % 2 4 14423
30 % 2 4 13112
Entity #63 | Chains: UP
Utp16 protein, length: 364 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 16867
95 % 3 6 15209
90 % 3 6 14968
70 % 3 6 14056
50 % 3 6 11964
40 % 3 6 11229
30 % 3 6 10331
Entity #7 | Chains: UJ
UTP10 protein, length: 1802 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 11414
95 % 3 8 10755
90 % 3 8 10648
70 % 3 8 10244
50 % 3 8 9487
40 % 3 8 9045
30 % 3 8 8418
Entity #8 | Chains: UK
U3 small nucleolar RNA-associated protein 11 protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13166
95 % 3 7 12682
90 % 3 7 12481
70 % 3 7 11871
50 % 3 7 10854
40 % 3 7 10216
30 % 3 7 9443
Entity #9 | Chains: UL
Utp12 protein, length: 962 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12757
95 % 3 7 12942
90 % 3 7 12288
70 % 3 7 11701
50 % 3 7 11061
40 % 3 11 6844
30 % 3 11 6526

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6RXT 13 UQ Utp17 209285
2 6RXU 13 UQ Utp17 209285
3 6RXV 13 UQ Utp17 209285
4 6RXX 50 UQ Utp17 209285
5 6RXY 13 UQ Utp17 209285
6 6RXZ 13 UQ Utp17 209285
7 5OQL 13 M Utp17 209285