Sequence Similarity Clusters for the Entities in PDB 6RMG

Entity #1 | Chains: A
Protein patched homolog 1,GFP-like fluorescent chromoprotein FP506, related protein, length: 1471 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 77593
95 % 1 1 53782
90 % 1 1 50832
70 % 2 11 4004
50 % 2 11 3922
40 % 2 11 3747
30 % 2 11 3790
Entity #2 | Chains: B
Sonic hedgehog protein protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 79230
95 % 1 1 53781
90 % 1 1 41995
70 % 1 1 44441
50 % 1 1 38410
40 % 1 1 34743
30 % 1 1 30639

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures