Sequence Similarity Clusters for the Entities in PDB 6Q0J

Entity #1 | Chains: A,B
Serine/threonine-protein kinase B-raf protein, length: 805 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 26688
95 % 3 5 9361
90 % 3 5 9267
70 % 3 5 9019
50 % 3 5 8382
40 % 3 5 8055
30 % 3 5 7528
Entity #2 | Chains: C,D
Dual specificity mitogen-activated protein kinase kinase 1 protein, length: 415 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 27111
95 % 6 7 10954
90 % 6 7 10835
70 % 13 14 5020
50 % 13 14 4864
40 % 13 14 4735
30 % 13 14 4602
Entity #3 | Chains: X,Y
14-3-3 protein zeta protein, length: 247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 11381
95 % 3 4 10742
90 % 3 4 10627
70 % 89 91 174
50 % 205 207 109
40 % 205 207 129
30 % 205 207 136

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures