Sequence Similarity Clusters for the Entities in PDB 6NK5

Entity #1 | Chains: A,B,C,D
E1 glycoprotein protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 9902
95 % 1 4 4905
90 % 6 10 2803
70 % 6 10 2825
50 % 6 11 2458
40 % 6 11 2468
30 % 6 11 2467
Entity #2 | Chains: E,F,G,H
E2 glycoprotein protein, length: 419 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 9648
95 % 1 2 10530
90 % 1 4 5004
70 % 1 4 4952
50 % 1 4 4825
40 % 1 13 1453
30 % 1 13 1453
Entity #3 | Chains: I,J,K,L
Capsid protein protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 4347
95 % 2 6 3457
90 % 4 9 2351
70 % 4 9 2420
50 % 20 27 1095
40 % 20 27 1129
30 % 20 27 1171

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6NK5 2 E, F, G, H E2 glycoprotein UNP residues 330-748 37124
2 6NK6 3 E, F, G, H E2 glycoprotein UNP residues 330-748 37124