Sequence Similarity Clusters for the Entities in PDB 6K6A

Entity #1 | Chains: A,B
3LRH intrabody protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44429
95 % 3 6 9812 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 3 6 9733
70 % 3 6 9448
50 % 3 6 8793
40 % 3 6 8424
30 % 3 6 7855
Entity #2 | Chains: C,D
Engineered Protein A protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38676
95 % 2 2 19880 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 3 3 18077
70 % 3 5 8506
50 % 3 5 7696
40 % 3 5 7427
30 % 3 5 7347

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6K64 2 C, H Protein A 1280
2 6K6A 2 C, D Engineered Protein A 1280