Sequence Similarity Clusters for the Entities in PDB 6K6A

Entity #1 | Chains: A,B
3LRH intrabody protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44236
95 % 3 6 9912 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 3 6 9814
70 % 3 6 9526
50 % 3 6 8864
40 % 3 6 8498
30 % 3 6 7939
Entity #2 | Chains: C,D
Engineered Protein A protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44237
95 % 2 2 23534 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 3 3 18046
70 % 3 5 8419
50 % 3 5 7678
40 % 3 5 7850
30 % 3 5 7340

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6K3M 2 A 3LRH intrabody 9606
2 6K64 1 A, B 3LRH intrabody 9606
3 6K6A 1 A, B 3LRH intrabody 9606
4 6K67 1 A, C 3LRH introbody 9606
5 6K6B 1 A 3LRH intrabody 9606
6 6K69 1 A 3LRH intrabody 9606