6J0N

Cryo-EM Structure of an Extracellular Contractile Injection System, baseplate in extended state, refined in C6 symmetry


Sequence Similarity Clusters for the Entities in PDB 6J0N

Entity #1 | Chains: D,E,F,G,H,I
Pvc9 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14344
95 % 1 1 16561
90 % 1 1 14384
70 % 1 1 15242
50 % 1 1 13760
40 % 2 2 10251
30 % 2 2 9524
Entity #2 | Chains: J,K,L,M,N,O
Pvc11 protein, length: 728 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17783
95 % 1 1 14607
90 % 1 1 16265
70 % 1 1 13579
50 % 1 1 12337
40 % 1 1 11567
30 % 1 1 10629
Entity #3 | Chains: P,Q,R,S,T,U
Pvc12 protein, length: 950 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14345
95 % 1 1 14606
90 % 1 1 16263
70 % 1 1 13578
50 % 1 1 12336
40 % 2 2 10316
30 % 2 2 9525
Entity #4 | Chains: V,W,X,Y,Z,a
Pvc4 protein, length: 410 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17785
95 % 1 1 14609
90 % 1 1 14129
70 % 1 1 13581
50 % 1 1 12338
40 % 3 3 9121
30 % 3 3 8482
Entity #5 | Chains: b,c,d,e,f,g
Pvc7 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14346
95 % 1 1 14608
90 % 1 1 14385
70 % 1 1 13580
50 % 3 3 8593
40 % 3 3 8234
30 % 3 3 7687
Entity #6 | Chains: h,i,j,k,l,m
Pvc2 protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 1809
95 % 1 3 2385
90 % 1 3 2450
70 % 1 3 2500
50 % 1 3 2529
40 % 6 8 2122
30 % 6 8 2150
Entity #7 | Chains: n,o,p,q,r,s
Pvc5 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14347
95 % 1 1 14610
90 % 1 1 14386
70 % 1 1 13582
50 % 2 2 10969
40 % 2 2 10326
30 % 2 2 9537
Entity #8 | Chains: 1,2,3,4,5,z
Pvc1 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 2427
95 % 1 3 3098
90 % 1 3 3184
70 % 4 6 2480
50 % 4 6 2518
40 % 4 6 2536
30 % 4 6 2518
Entity #9 | Chains: t,u,v,w,x,y
Pvc3 protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14348
95 % 1 1 14611
90 % 1 1 14387
70 % 1 1 13583
50 % 1 1 12339
40 % 6 6 6976
30 % 6 6 6554

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6RAO 4 F Afp5 42906
2 6J0N 7 n, o, p, q, r, s Pvc5 291112