6J0N

Cryo-EM Structure of an Extracellular Contractile Injection System, baseplate in extended state, refined in C6 symmetry


Sequence Similarity Clusters for the Entities in PDB 6J0N

Entity #1 | Chains: D,E,F,G,H,I
Pvc9 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14409
95 % 1 1 16587
90 % 1 1 14429
70 % 1 1 13643
50 % 1 1 12430
40 % 2 2 10833
30 % 2 2 9575
Entity #2 | Chains: J,K,L,M,N,O
Pvc11 protein, length: 728 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14411
95 % 1 1 14694
90 % 1 1 16133
70 % 1 1 15258
50 % 1 1 12248
40 % 1 1 11625
30 % 1 1 10554
Entity #3 | Chains: P,Q,R,S,T,U
Pvc12 protein, length: 950 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14410
95 % 1 1 14693
90 % 1 1 14430
70 % 1 1 13644
50 % 1 1 12431
40 % 2 2 10362
30 % 2 2 9576
Entity #4 | Chains: V,W,X,Y,Z,a
Pvc4 protein, length: 410 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14412
95 % 1 1 14696
90 % 1 1 16291
70 % 1 1 13646
50 % 1 1 12433
40 % 3 3 9197
30 % 3 3 8539
Entity #5 | Chains: b,c,d,e,f,g
Pvc7 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17799
95 % 1 1 14695
90 % 1 1 14431
70 % 1 1 13645
50 % 3 3 8627
40 % 3 3 8269
30 % 3 3 7721
Entity #6 | Chains: h,i,j,k,l,m
Pvc2 protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 1817
95 % 1 3 2405
90 % 1 3 2459
70 % 1 3 2515
50 % 1 3 2541
40 % 6 8 2041
30 % 6 8 2082
Entity #7 | Chains: n,o,p,q,r,s
Pvc5 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14413
95 % 1 1 14697
90 % 1 1 14432
70 % 1 1 13647
50 % 2 2 11032
40 % 2 2 10377
30 % 2 2 9589
Entity #8 | Chains: 1,2,3,4,5,z
Pvc1 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 2426
95 % 1 3 3127
90 % 1 3 3193
70 % 4 6 2499
50 % 4 6 2528
40 % 4 6 2548
30 % 4 6 2533
Entity #9 | Chains: t,u,v,w,x,y
Pvc3 protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14414
95 % 1 1 14698
90 % 1 1 14433
70 % 1 1 13648
50 % 1 1 12434
40 % 6 6 7020
30 % 6 6 6588

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6J0N 1 D, E, F, G, H, I Pvc9 291112