6IMM

Cryo-EM structure of an alphavirus, Sindbis virus


Sequence Similarity Clusters for the Entities in PDB 6IMM

Entity #1 | Chains: N,T,Z,a
Spike glycoprotein E1 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 26872
95 % 1 1 27128
90 % 1 1 26218
70 % 1 3 7316
50 % 1 3 6974
40 % 7 11 1849
30 % 7 11 1881
Entity #2 | Chains: P,V,d,e
Spike glycoprotein E2 protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 26870
95 % 1 1 27126
90 % 1 1 21739
70 % 1 2 12305
50 % 1 2 10150
40 % 10 14 1449
30 % 10 14 1462
Entity #3 | Chains: R,X,h,i
Assembly protein E3 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 26871
95 % 1 1 27127
90 % 1 1 20162
70 % 1 1 23509
50 % 1 1 20931
40 % 1 1 17879
30 % 1 1 17172

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6IMM 3 R, X, h, i Assembly protein E3 11034