6IMM

Cryo-EM structure of an alphavirus, Sindbis virus


Sequence Similarity Clusters for the Entities in PDB 6IMM

Entity #1 | Chains: N,T,Z,a
Spike glycoprotein E1 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 26805
95 % 1 1 27069
90 % 1 1 26157
70 % 1 3 7258
50 % 1 3 6914
40 % 7 11 1819
30 % 7 11 1838
Entity #2 | Chains: P,V,d,e
Spike glycoprotein E2 protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 26803
95 % 1 1 21412
90 % 1 1 26155
70 % 1 2 12270
50 % 1 2 10742
40 % 10 14 1430
30 % 10 14 1475
Entity #3 | Chains: R,X,h,i
Assembly protein E3 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 26804
95 % 1 1 27068
90 % 1 1 26156
70 % 1 1 22088
50 % 1 1 20907
40 % 1 1 19121
30 % 1 1 17140

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6IMM 1 N, T, Z, a Spike glycoprotein E1 11034