6IMM

Cryo-EM structure of an alphavirus, Sindbis virus


Sequence Similarity Clusters for the Entities in PDB 6IMM

Entity #1 | Chains: N,T,Z,a
Spike glycoprotein E1 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 27009
95 % 1 1 25140
90 % 1 1 26286
70 % 1 3 7342
50 % 1 3 6975
40 % 7 11 1847
30 % 7 11 1863
Entity #2 | Chains: P,V,d,e
Spike glycoprotein E2 protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 28233
95 % 1 1 27231
90 % 1 1 21790
70 % 1 2 11010
50 % 1 2 10810
40 % 10 14 1429
30 % 10 14 1462
Entity #3 | Chains: R,X,h,i
Assembly protein E3 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 27008
95 % 1 1 27232
90 % 1 1 21792
70 % 1 1 23896
50 % 1 1 19548
40 % 1 1 19199
30 % 1 1 17223

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6ODF 1 A, C, E, G E1 UNP residues 802-1242 11021 3.4.21.90 | Details
2 6MWV 1 A, E, I, M E1 ectodomain (UNP residues 802-1242) 11021
3 6MWX 1 A, E, I, M E1 ectodomain (UNP residues 802-1242) 11021
4 6MX4 1 A, D, G, J E1 ectodomain (UNP residues 802-1242) 11021
5 6MW9 1 A, E, I, M E1 ectodomain (UNP residues 802-1242) 11021
6 6MWC 1 A, E, I, M E1 ectodomain (UNP residues 802-1242) 11021
7 6IMM 1 N, T, Z, a Spike glycoprotein E1 11034
8 6MUI 1 A, E, I, M E1 ectodomain (UNP residues 802-1242) 11021
9 3J0F 2 E, F, G, H E1 envelope glycoprotein UNP residues 807-1245 11034
10 2YEW 2 B, E, H, K E1 ENVELOPE GLYCOPROTEIN 11020
11 1LD4 3 M, N, O, P Spike glycoprotein E1 11034