Sequence Similarity Clusters for the Entities in PDB 6ILO

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 87734
95 % 1 1 49140
90 % 1 1 56710
70 % 1 1 46178
50 % 1 2 32069
40 % 1 9 8127
30 % 3 15 4966
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 13469
95 % 4 7 13285
90 % 4 7 13106
70 % 14 31 825
50 % 110 230 193
40 % 110 230 209
30 % 115 243 210
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 87732
95 % 4 7 13158
90 % 4 7 12978
70 % 14 31 827
50 % 119 242 175
40 % 119 244 183
30 % 119 244 192

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6ILO 1 A Capsid protein VP1 138949