6ILO

Cryo-EM structure of empty Echovirus 6 particle at PH 7.4


Sequence Similarity Clusters for the Entities in PDB 6ILO

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 86090
95 % 1 1 57284
90 % 1 1 57781
70 % 1 1 50163
50 % 1 2 32659
40 % 1 9 8316
30 % 3 15 5065
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 13872
95 % 4 7 13429
90 % 4 7 13258
70 % 14 31 855
50 % 113 233 195
40 % 113 233 210
30 % 118 246 214
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 89546
95 % 4 7 12990
90 % 4 7 12824
70 % 14 31 857
50 % 120 243 177
40 % 122 247 185
30 % 143 289 128

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6ILO 1 A Capsid protein VP1 138949
2 3J2J 1 A Protein VP1 UNP residues 631-852 138949