6ILL

Cryo-EM structure of Echovirus 6 complexed with its uncoating receptor FcRn at PH 5.5


Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 17378
95 % 1 6 15479
90 % 1 6 15233
70 % 8 16 5244
50 % 11 29 915
40 % 116 232 197
30 % 118 236 207
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 13872
95 % 1 7 13429
90 % 1 7 13258
70 % 11 31 855
50 % 110 233 195
40 % 110 233 210
30 % 115 246 214
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 14437
95 % 1 7 12990
90 % 1 7 12824
70 % 11 31 857
50 % 117 243 177
40 % 119 247 185
30 % 140 289 128
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 55746
95 % 3 8 10494
90 % 10 20 4183
70 % 31 81 833
50 % 90 161 416
40 % 90 161 438
30 % 90 161 459

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6ILL 3 C Capsid protein VP3 138949
2 6ILM 3 C Capsid protein VP3 138949
3 6ILN 3 C Capsid protein VP3 138949
4 6ILP 3 C Capsid protein VP3 138949
5 6ILJ 3 C Capsid protein VP3 138949
6 6ILK 3 C Capsid protein VP3 138949