6ILL

Cryo-EM structure of Echovirus 6 complexed with its uncoating receptor FcRn at PH 5.5


Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 15608
95 % 1 6 16205
90 % 1 6 15916
70 % 8 16 5431
50 % 11 29 931
40 % 121 237 195
30 % 121 237 207
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 14030
95 % 1 7 13606
90 % 1 7 13443
70 % 11 31 875
50 % 115 238 198
40 % 115 238 213
30 % 120 251 213
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 17731
95 % 1 7 13544
90 % 1 7 13382
70 % 11 31 873
50 % 122 248 174
40 % 124 252 186
30 % 145 294 130
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 56260
95 % 3 8 10617
90 % 10 20 4229
70 % 31 81 854
50 % 92 163 410
40 % 92 163 444
30 % 92 163 459

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6ILL 1 A Capsid protein VP1 138949
2 6ILM 1 A Capsid protein VP1 138949
3 6ILN 1 A Capsid protein VP1 138949
4 6ILP 1 A Capsid protein VP1 138949
5 6ILJ 1 A Capsid protein VP1 138949
6 6ILK 1 A Capsid protein VP1 138949