6ILL

Cryo-EM structure of Echovirus 6 complexed with its uncoating receptor FcRn at PH 5.5


Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 17566
95 % 1 6 17250
90 % 1 6 15512
70 % 8 16 5529
50 % 11 29 944
40 % 63 134 390
30 % 120 238 204
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 14012
95 % 1 7 13581
90 % 1 7 13419
70 % 11 31 870
50 % 112 235 202
40 % 112 235 213
30 % 117 248 212
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 17852
95 % 1 7 13582
90 % 1 7 13420
70 % 11 31 871
50 % 119 245 177
40 % 121 249 187
30 % 121 249 195
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 56187
95 % 3 8 10562
90 % 10 20 4221
70 % 42 96 691
50 % 90 161 419
40 % 90 161 446
30 % 90 161 464

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1OOP 1 A Coat protein VP1 138949
2 1MQT 1 A Polyprotein SVDV COAT PROTEIN VP1 138949
3 4GB3 1 1 coat protein 1 UNP residues 571-851 138949
4 1COV 1 1 COXSACKIEVIRUS COAT PROTEIN 138949
5 1EV1 1 1 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
6 6RJF 1 1 VP1 138949
7 6O06 1 A VP1 UNP residues 570-850 138949
8 6ILL 1 A Capsid protein VP1 138949
9 6ILM 1 A Capsid protein VP1 138949
10 6ILN 1 A Capsid protein VP1 138949
11 6ILP 1 A Capsid protein VP1 138949
12 6ILJ 1 A Capsid protein VP1 138949
13 6ILK 1 A Capsid protein VP1 138949
14 6GZV 1 A Capsid protein VP1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
15 3JD7 1 1 Capsid protein VP1 UNP residues 571-851 138949
16 1JEW 2 1 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP1 Residues 571-851 138949