6ILL

Cryo-EM structure of Echovirus 6 complexed with its uncoating receptor FcRn at PH 5.5


Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 17510
95 % 1 6 15716
90 % 1 6 14145
70 % 8 16 5260
50 % 11 29 924
40 % 118 234 197
30 % 120 238 207
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 13955
95 % 1 7 13479
90 % 1 7 13270
70 % 11 31 868
50 % 112 235 199
40 % 112 235 213
30 % 117 248 215
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 16286
95 % 1 7 13442
90 % 1 7 13226
70 % 11 31 865
50 % 119 245 177
40 % 121 249 186
30 % 142 291 131
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 50828
95 % 3 8 10551
90 % 10 20 4194
70 % 31 81 847
50 % 90 161 418
40 % 90 161 446
30 % 90 161 464

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1D4M 1 1 PROTEIN (COXSACKIEVIRUS A9) VP1 138949
2 1H8T 1 A ECHOVIRUS 11 COAT PROTEIN VP1 138949
3 1OOP 1 A Coat protein VP1 138949
4 1MQT 1 A Polyprotein SVDV COAT PROTEIN VP1 138949
5 4GB3 1 1 coat protein 1 UNP residues 571-851 138949
6 2X5I 1 A VP1 138949
7 1COV 1 1 COXSACKIEVIRUS COAT PROTEIN 138949
8 1EV1 1 1 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
9 6RJF 1 1 VP1 138949
10 6O06 1 A VP1 UNP residues 570-850 138949
11 6ILL 1 A Capsid protein VP1 138949
12 6ILM 1 A Capsid protein VP1 138949
13 6ILN 1 A Capsid protein VP1 138949
14 6ILP 1 A Capsid protein VP1 138949
15 6ILJ 1 A Capsid protein VP1 138949
16 6ILK 1 A Capsid protein VP1 138949
17 6HHT 1 A1, A2, D1, D2, G1, G2, J1, J2, M1, M2, P1, P2, S1, S2, V1, V2, Y2, b2, e2, h2, k2, n2, q2, t2, w2 Echovirus 18 capsid protein 1 138949
18 6HBG 1 A Echovirus 18 viral protein 1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
19 6HBH 1 A Echovirus 18 capsid protein 1 138949
20 6HBJ 1 A Viral protein 1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
21 6HBK 1 A, D, G, J, M, P, S, V, Y, b, e Echovirus 18 capsid protein 1 138949
22 6HBL 1 A, D, G, J, M, P, S, V, Y, b, e, h, k, n, q Echovirus 18 capsid protein 1 138949
23 6GZV 1 A Capsid protein VP1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
24 3JD7 1 1 Capsid protein VP1 UNP residues 571-851 138949
25 3IYP 1 A Capsid protein 138949
26 2C8I 1 A ECHOVIRUS 11 COAT PROTEIN VP1 138949
27 1UPN 1 A ECHOVIRUS 11 COAT PROTEIN VP1 138949
28 1M11 2 1 COAT PROTEIN VP1 138949
29 1JEW 2 1 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP1 Residues 571-851 138949