6ILL

Cryo-EM structure of Echovirus 6 complexed with its uncoating receptor FcRn at PH 5.5


Sequence Similarity Clusters for the Entities in PDB 6ILL

Entity #1 | Chains: A
Capsid protein VP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 17566
95 % 1 6 17250
90 % 1 6 15512
70 % 8 16 5529
50 % 11 29 944
40 % 63 134 390
30 % 120 238 204
Entity #2 | Chains: B
Capsid protein VP2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 14012
95 % 1 7 13581
90 % 1 7 13419
70 % 11 31 870
50 % 112 235 202
40 % 112 235 213
30 % 117 248 212
Entity #3 | Chains: C
Capsid protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 17852
95 % 1 7 13582
90 % 1 7 13420
70 % 11 31 871
50 % 119 245 177
40 % 121 249 187
30 % 121 249 195
Entity #4 | Chains: D
Capsid protein VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 56187
95 % 3 8 10562
90 % 10 20 4221
70 % 42 96 691
50 % 90 161 419
40 % 90 161 446
30 % 90 161 464

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Q4W 1 1 Coxsackievirus capsid protein VP1 138950
2 4Q4X 1 1 Coxsackievirus capsid protein VP1 138950
3 4Q4Y 1 1 Coxsackievirus capsid protein VP1 138950
4 1AYM 1 1 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
5 1PVC 2 1 POLIOVIRUS TYPE 3, SABIN STRAIN P3/SABIN P3/LEON/12A(1)B 138950
6 1FPN 1 1 COAT PROTEIN VP1 147711
7 1ND2 1 A coat protein VP1 147711
8 1HXS 1 1 GENOME POLYPROTEIN, COAT PROTEIN VP1 RESIDUES 579-880 138950
9 1NCQ 1 A COAT PROTEIN VP1 147712
10 1D4M 1 1 PROTEIN (COXSACKIEVIRUS A9) VP1 138949
11 4RHV 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
12 1EAH 1 1 POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4 138950
13 4Q4V 1 1 Coxsackievirus capsid protein VP1 138950
14 1K5M 1 A COAT PROTEIN VP1 (P1D) 147712
15 1QJU 1 1 PROTEIN VP1 RESIDUES 569-853 147711
16 2PLV 1 1 HUMAN POLIOVIRUS TYPE 1 (SUBUNIT VP1) 138950
17 4PDW 1 A Genome polyprotein resdiues 568-856 147712 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
18 1QJX 1 1 PROTEIN VP1 RESIDUES 569-853 147711
19 1QJY 1 1 PROTEIN VP1 RESIDUES 569-853 147711
20 1NCR 1 A coat protein VP1 147711
21 1AYN 1 1 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
22 1C8M 1 1 HUMAN RHINOVIRUS 16 COAT PROTEIN RESIDUES 569-853 147711
23 1AR7 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
24 1ND3 1 A coat protein VP1 147711
25 1AL2 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
26 1PO1 2 1 POLIOVIRUS TYPE 1 MAHONEY 138950
27 1AR9 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
28 1H8T 1 A ECHOVIRUS 11 COAT PROTEIN VP1 138949
29 1PO2 2 1 POLIOVIRUS TYPE 1 MAHONEY 138950
30 1ASJ 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
31 1Z7S 1 1 Human COXSACKIEVIRUS A21 Viral Protein 1 138950
32 1OOP 1 A Coat protein VP1 138949
33 3VDD 1 A Protein VP1 UNP residues 568-850 147711
34 1NA1 1 A Coat protein VP1 147712
35 1VBB 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
36 1POV 2 1 POLIOVIRUS NATIVE EMPTY CAPSID (TYPE 1) 138950
37 1AR6 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
38 1AR8 2 1 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
39 1VBC 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
40 3TN9 1 1 Protein VP1 147711
41 1VBE 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
42 1VBD 2 1 POLIOVIRUS TYPE 1 MAHONEY P1/MAHONEY 138950
43 1RHI 1 1 HUMAN RHINOVIRUS 3 COAT PROTEIN 147712
44 1VBA 2 1 POLIOVIRUS TYPE 3 THE NUMBERING OF THE VP1 RESIDUES HAS BEEN ALTERED TO FACILITATE COMPARISON WITH THE STRUCTURE OF THE MAHONEY STRAIN OF TYPE 1 POLIOVIRUS (PDB ENTRY 2PLV). MAHONEY HAS A TWO RESIDUE INSERTION, RELATIVE TO P3/SABIN, LOCATED IN THE DISORDERED N-TERMINUS OF VP1. THUS THE RESIDUES NUMBERED 24 - 302 IN THIS ENTRY ARE ACTUALLY RESIDUES 22 - 300. 138950
45 1MQT 1 A Polyprotein SVDV COAT PROTEIN VP1 138949
46 1RVF 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN 147712
47 4GB3 1 1 coat protein 1 UNP residues 571-851 138949
48 2X5I 1 A VP1 138949
49 1PIV 2 1 POLIOVIRUS TYPE 3 (SUBUNIT VP1) 138950
50 1COV 1 1 COXSACKIEVIRUS COAT PROTEIN 138949
51 1R1A 1 1 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1) 147711
52 1EV1 1 1 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
53 1V9U 1 1 Coat protein VP1 147711
54 3DPR 1 A Protein VP1 147711
55 4L3B 1 A Protein VP1 UNP residues 568-856 147711
56 6SK5 3 A Rhinovirus B5 VP1 147712
57 6SK6 3 A Rhinovirus B5 VP1 147712
58 6SK7 1 A VP1 capsid protein 147711 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
59 6P9O 1 1 VP1 UNP residues 580-881 138950
60 6P9W 1 1 VP1 UNP residues 580-881 138950
61 6RJF 1 1 VP1 138949
62 6O06 1 A VP1 UNP residues 570-850 138949
63 6ILL 1 A Capsid protein VP1 138949
64 6ILM 1 A Capsid protein VP1 138949
65 6ILN 1 A Capsid protein VP1 138949
66 6ILP 1 A Capsid protein VP1 138949
67 6ILJ 1 A Capsid protein VP1 138949
68 6ILK 1 A Capsid protein VP1 138949
69 6HHT 1 A1, A2, D1, D2, G1, G2, J1, J2, M1, M2, P1, P2, S1, S2, V1, V2, Y2, b2, e2, h2, k2, n2, q2, t2, w2 Echovirus 18 capsid protein 1 138949
70 6HBG 1 A Echovirus 18 viral protein 1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
71 6HBH 1 A Echovirus 18 capsid protein 1 138949
72 6HBJ 1 A Viral protein 1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
73 6HBK 1 A, D, G, J, M, P, S, V, Y, b, e Echovirus 18 capsid protein 1 138949
74 6HBL 1 A, D, G, J, M, P, S, V, Y, b, e, h, k, n, q Echovirus 18 capsid protein 1 138949
75 6GZV 1 A Capsid protein VP1 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
76 6EIT 1 1 VP1 138950
77 5W3L 1 A viral protein 1 UNP residues 568-856 147712
78 5W3M 3 A viral protein 1 UNP residues 568-856 147712
79 5W3O 3 A viral protein 1 UNP residues 568-856 147712
80 5W3E 3 A viral protein 1 UNP residues 568-856 147712
81 5O5P 1 1 Capsid proteins, VP1 138950
82 5O5B 1 1 Capsid proteins 138950
83 3JD7 1 1 Capsid protein VP1 UNP residues 571-851 138949
84 3JBC 1 1 Capsid protein VP1 UNP residues 580-881 138950
85 3JBD 1 1 Capsid protein VP1 UNP residues 580-881 138950
86 3JBE 1 1 Capsid protein VP1 UNP residues 580-881 138950
87 3JBF 1 1 Capsid protein VP1 UNP residues 580-881 138950
88 3JBG 1 1 Capsid protein VP1 UNP residues 580-881 138950
89 3J9F 1 1 Protein VP1 UNP residues 580-881 138950
90 3J8F 1 1 Capsid protein VP1 UNP residues 580-881 138950
91 3J48 1 1 Protein VP1 UNP residues 580-881 138950
92 3J3O 4 1 Protein VP1 UNP residues 580-881 138950
93 3J3P 3 1 Protein VP1 UNP residues 580-881 138950
94 3IYP 1 A Capsid protein 138949
95 3EPC 2 1 Protein VP1 138950
96 3EPD 3 1 protein VP1 138950
97 3EPF 2 1 Protein VP1 138950
98 2C8I 1 A ECHOVIRUS 11 COAT PROTEIN VP1 138949
99 1Z7Z 1 1 human coxsackievirus A21 Viral Protein 1 residues 1073-1286 138950
100 1UPN 1 A ECHOVIRUS 11 COAT PROTEIN VP1 138949
101 1NN8 2 1 coat protein VP1 138950
102 1M11 2 1 COAT PROTEIN VP1 138949
103 1JEW 2 1 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP1 Residues 571-851 138949
104 1DGI 2 1 VP1 138950
105 1D3E 2 1 PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP1) 169066
106 1D3I 2 1 PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP1) 169066
107 1VRH 1 1 RHINOVIRUS 14 147712
108 1RUC 1 1 RHINOVIRUS 14 147712
109 1RUD 1 1 RHINOVIRUS 14 147712
110 1RUE 1 1 RHINOVIRUS 14 147712
111 1RUF 1 1 RHINOVIRUS 14 147712
112 1RUG 1 1 RHINOVIRUS 14 147712
113 1RUH 1 1 RHINOVIRUS 14 147712
114 1RUI 1 1 RHINOVIRUS 14 147712
115 1RUJ 1 1 RHINOVIRUS 14 147712
116 1HRV 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
117 2HWB 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
118 2HWC 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
119 2HWD 1 1 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1) 147711
120 2HWE 1 1 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1) 147711
121 2HWF 1 1 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1) 147711
122 1HRI 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
123 1R09 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
124 1R08 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
125 1RMU 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
126 2R04 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
127 2R06 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
128 2R07 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
129 2RM2 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
130 2RMU 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
131 2RR1 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
132 2RS1 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 169066
133 2RS3 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712
134 2RS5 1 1 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) 147712