Sequence Similarity Clusters for the Entities in PDB 6IAP

Entity #1 | Chains: A
Natural cytotoxicity triggering receptor 1 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 37427
95 % 2 2 42950 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 2 2 40899
70 % 2 2 36132
50 % 2 2 31299
40 % 22 33 1411
30 % 27 40 1194
Entity #2 | Chains: D
Fab NKp46-4 light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72745
95 % 1 1 60033
90 % 469 803 2
70 % 1539 2454 2
50 % 3903 6328 1
40 % 3913 6341 1
30 % 3941 6387 1
Entity #3 | Chains: E
Fab NKp46-4 heavy chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72744
95 % 1 1 60032
90 % 1 1 56522
70 % 1873 3036 1
50 % 3904 6328 1
40 % 3914 6341 1
30 % 3942 6387 1
Entity #4 | Chains: H
Fab NKp46-1 heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 72747
95 % 2 2 36261 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 2 41245
70 % 1874 3036 1
50 % 3905 6328 1
40 % 3915 6341 1
30 % 3943 6387 1
Entity #5 | Chains: L
Fab NKp46-1 light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 47056
95 % 134 235 67 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 470 803 2
70 % 1540 2454 2
50 % 3906 6328 1
40 % 3916 6341 1
30 % 3944 6387 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6IAS 1 H Fab NKp46-1 heavy chain 32630
2 6IAP 4 H Fab NKp46-1 heavy chain 32630