Sequence Similarity Clusters for the Entities in PDB 6FLP

Entity #1 | Chains: A,B
DNA-directed RNA polymerase subunit alpha protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 45 220
95 % 37 45 281
90 % 37 45 291
70 % 37 45 337
50 % 37 45 404
40 % 112 127 142
30 % 113 128 152
Entity #2 | Chains: C
DNA-directed RNA polymerase subunit beta protein, length: 1342 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 63 367
95 % 51 71 367
90 % 51 71 389
70 % 51 71 434
50 % 51 71 495
40 % 126 153 239
30 % 259 325 139
Entity #3 | Chains: D
DNA-directed RNA polymerase subunit beta' protein, length: 1407 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 70 289
95 % 51 71 368
90 % 51 71 390
70 % 51 71 435
50 % 51 71 496
40 % 126 153 235
30 % 126 153 250
Entity #4 | Chains: E
DNA-directed RNA polymerase subunit omega protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 68 311
95 % 50 68 394
90 % 50 68 426
70 % 50 68 467
50 % 50 68 519
40 % 50 68 563
30 % 50 68 571
Entity #5 | Chains: N
DNA (30-MER) dna, length: 31 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: R
RNA (5'-R(P*GP*AP*UP*GP*UP*GP*UP*GP*CP*U)-3') rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: T
DNA (39-MER) dna, length: 39 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures