Sequence Similarity Clusters for the Entities in PDB 6FLP

Entity #1 | Chains: A,B
DNA-directed RNA polymerase subunit alpha protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 45 225
95 % 37 45 287
90 % 37 45 297
70 % 37 45 345
50 % 37 45 415
40 % 116 132 141
30 % 117 133 153
Entity #2 | Chains: C
DNA-directed RNA polymerase subunit beta protein, length: 1342 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 63 375
95 % 51 71 375
90 % 51 71 400
70 % 51 71 439
50 % 51 71 503
40 % 130 158 242
30 % 273 340 143
Entity #3 | Chains: D
DNA-directed RNA polymerase subunit beta' protein, length: 1407 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 70 300
95 % 51 71 376
90 % 51 71 401
70 % 51 71 440
50 % 51 71 504
40 % 130 158 240
30 % 130 158 254
Entity #4 | Chains: E
DNA-directed RNA polymerase subunit omega protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 68 321
95 % 50 68 404
90 % 50 68 436
70 % 50 68 469
50 % 50 68 525
40 % 50 68 568
30 % 50 68 577
Entity #5 | Chains: N
DNA (30-MER) dna, length: 31 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: R
RNA (5'-R(P*GP*AP*UP*GP*UP*GP*UP*GP*CP*U)-3') rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: T
DNA (39-MER) dna, length: 39 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures