Sequence Similarity Clusters for the Entities in PDB 6FLP

Entity #1 | Chains: A,B
DNA-directed RNA polymerase subunit alpha protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 41 226
95 % 33 41 291
90 % 33 41 304
70 % 33 41 352
50 % 33 41 424
40 % 104 119 143
30 % 105 120 155
Entity #2 | Chains: C
DNA-directed RNA polymerase subunit beta protein, length: 1342 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 57 384
95 % 47 64 410
90 % 47 64 445
70 % 47 64 477
50 % 47 64 529
40 % 118 142 244
30 % 245 308 143
Entity #3 | Chains: D
DNA-directed RNA polymerase subunit beta' protein, length: 1407 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 63 325
95 % 47 64 408
90 % 47 64 444
70 % 47 64 474
50 % 47 64 526
40 % 118 142 240
30 % 118 142 254
Entity #4 | Chains: E
DNA-directed RNA polymerase subunit omega protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 61 340
95 % 46 61 435
90 % 46 61 474
70 % 46 61 503
50 % 46 61 546
40 % 46 61 589
30 % 46 61 590
Entity #5 | Chains: N
DNA (30-MER) dna, length: 31 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: R
RNA (5'-R(P*GP*AP*UP*GP*UP*GP*UP*GP*CP*U)-3') rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: T
DNA (39-MER) dna, length: 39 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures