Sequence Similarity Clusters for the Entities in PDB 6EPD

Entity #1 | Chains: A
Proteasome subunit alpha type-6 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 40 511
95 % 19 40 637
90 % 19 40 665
70 % 19 40 717
50 % 260 293 64
40 % 260 294 78
30 % 1828 2081 3
Entity #10 | Chains: 3
Proteasome subunit beta type-3 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 40 506
95 % 19 40 628
90 % 19 40 657
70 % 19 40 706
50 % 260 293 60
40 % 260 294 76
30 % 260 294 93
Entity #11 | Chains: 4
Proteasome subunit beta type-2 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 31 783
95 % 19 40 632
90 % 19 40 661
70 % 19 40 712
50 % 19 40 770
40 % 259 293 82
30 % 259 293 96
Entity #12 | Chains: 5
Proteasome subunit beta type-5 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22176
95 % 2 4 19912
90 % 2 13 4070
70 % 2 13 3987
50 % 2 13 3871
40 % 2 13 3685
30 % 2 13 3377
Entity #13 | Chains: 6
Proteasome subunit beta type-1 protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22175
95 % 2 4 19911
90 % 2 14 3604
70 % 2 14 3550
50 % 2 14 3462
40 % 260 293 80
30 % 260 294 92
Entity #14 | Chains: 7
Proteasome subunit beta type-4 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22347
95 % 2 4 20040
90 % 2 14 3609
70 % 2 14 3553
50 % 2 14 3465
40 % 2 14 3320
30 % 2 14 3081
Entity #15 | Chains: W
26S proteasome subunit S5a protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22348
95 % 2 14 4412
90 % 2 14 4454
70 % 2 14 4356
50 % 2 14 4194
40 % 2 14 3973
30 % 2 14 3622
Entity #16 | Chains: V
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 14 protein, length: 310 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 25 2008
95 % 2 25 2316
90 % 2 25 2371
70 % 2 25 2370
50 % 2 38 1501
40 % 2 38 1486
30 % 2 38 1475
Entity #17 | Chains: T
Proteasome 26S subunit, non-ATPase 8 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22346
95 % 2 4 20039
90 % 2 13 5057
70 % 2 13 4925
50 % 2 13 4705
40 % 2 13 4444
30 % 2 13 4008
Entity #18 | Chains: Y
RCG28037 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 26 1796
95 % 6 26 2110
90 % 6 26 2156
70 % 6 26 2169
50 % 6 28 2069
40 % 6 28 2043
30 % 6 28 1941
Entity #19 | Chains: Z
26S proteasome non-ATPase regulatory subunit 2 protein, length: 908 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22177
95 % 2 26 2193
90 % 2 26 2245
70 % 2 26 2257
50 % 2 26 2245
40 % 2 38 1487
30 % 2 38 1476
Entity #2 | Chains: B
Proteasome subunit alpha type-2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 40 512
95 % 19 40 638
90 % 19 40 666
70 % 19 40 718
50 % 260 294 59
40 % 1050 1197 3
30 % 1829 2081 3
Entity #20 | Chains: N
26S proteasome non-ATPase regulatory subunit 1 protein, length: 953 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 25152
95 % 2 25 2341
90 % 2 25 2404
70 % 2 25 2401
50 % 2 25 2371
40 % 3 38 1451
30 % 3 38 1444
Entity #21 | Chains: S
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 3 protein, length: 530 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 25153
95 % 2 24 2474
90 % 2 24 2546
70 % 2 24 2534
50 % 2 24 2507
40 % 2 24 2460
30 % 2 24 2306
Entity #22 | Chains: P
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 12 protein, length: 456 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 23704
95 % 2 25 2367
90 % 2 25 2432
70 % 2 25 2428
50 % 2 25 2402
40 % 2 38 1502
30 % 2 38 1488
Entity #23 | Chains: Q
26S proteasome non-ATPase regulatory subunit 11 protein, length: 422 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 25 2050
95 % 2 25 2355
90 % 2 25 2418
70 % 4 27 2207
50 % 4 27 2210
40 % 4 40 1429
30 % 4 40 1422
Entity #24 | Chains: R
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 6 protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 25 2007
95 % 2 25 2371
90 % 2 25 2436
70 % 2 25 2435
50 % 2 25 2344
40 % 2 25 2318
30 % 2 38 1474
Entity #25 | Chains: U
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 7 (Predicted) protein, length: 320 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 25151
95 % 2 14 4563
90 % 2 14 4602
70 % 2 14 4493
50 % 2 14 4312
40 % 3 28 2143
30 % 3 28 2021
Entity #26 | Chains: O
26S proteasome non-ATPase regulatory subunit 13 protein, length: 376 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 23214
95 % 2 25 2312
90 % 2 25 2368
70 % 2 25 2366
50 % 2 25 2340
40 % 2 25 2313
30 % 2 39 1431
Entity #27 | Chains: H
26S proteasome regulatory subunit 7 protein, length: 433 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 24 2142
95 % 2 24 2455
90 % 2 24 2522
70 % 2 36 1547
50 % 2 36 1602
40 % 6 178 293
30 % 6 178 304
Entity #28 | Chains: I
26S proteasome regulatory subunit 4 protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 14 4025
95 % 2 14 4377
90 % 2 14 4423
70 % 2 26 2303
50 % 2 26 2287
40 % 2 26 2263
30 % 2 26 2132
Entity #29 | Chains: K
26S proteasome regulatory subunit 6B protein, length: 418 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 24 2115
95 % 2 24 2419
90 % 2 24 2483
70 % 2 24 2479
50 % 2 46 1245
40 % 7 178 293
30 % 7 178 304
Entity #3 | Chains: C
Proteasome subunit alpha type-4 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 26 887
95 % 19 40 636
90 % 19 40 664
70 % 19 40 716
50 % 260 294 57
40 % 1051 1197 3
30 % 1830 2081 3
Entity #30 | Chains: L
Proteasome 26S subunit, ATPase 6 protein, length: 403 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 24 2136
95 % 2 24 2456
90 % 2 24 2523
70 % 2 24 2513
50 % 3 60 947
40 % 8 178 293
30 % 8 178 304
Entity #31 | Chains: M
26S proteasome regulatory subunit 6A protein, length: 442 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 20107
95 % 2 24 2469
90 % 2 24 2539
70 % 2 36 1573
50 % 2 36 1628
40 % 9 178 293
30 % 9 178 304
Entity #32 | Chains: J
26S proteasome regulatory subunit 8 protein, length: 406 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 24 2112
95 % 2 24 2414
90 % 2 24 2478
70 % 2 36 1545
50 % 4 60 947
40 % 10 178 293
30 % 10 178 304
Entity #4 | Chains: D
Proteasome subunit alpha type-7 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21432
95 % 19 41 633
90 % 19 41 662
70 % 19 41 713
50 % 260 294 63
40 % 1052 1197 3
30 % 1831 2081 3
Entity #5 | Chains: E
Proteasome subunit alpha type-5 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21433
95 % 19 40 629
90 % 19 40 658
70 % 19 40 707
50 % 261 295 55
40 % 1053 1197 3
30 % 1832 2081 3
Entity #6 | Chains: F
Proteasome subunit alpha type-1 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 25 929
95 % 19 41 630
90 % 19 41 659
70 % 19 41 708
50 % 260 294 61
40 % 260 294 81
30 % 1833 2081 3
Entity #7 | Chains: G
Proteasome subunit alpha type-3 protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 37 492
95 % 20 41 521
90 % 20 41 554
70 % 20 41 586
50 % 261 294 44
40 % 261 294 62
30 % 1834 2081 3
Entity #8 | Chains: 1
Proteasome subunit beta type-6 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 25188
95 % 2 4 19305
90 % 2 14 3589
70 % 2 14 3534
50 % 2 14 3447
40 % 2 14 3306
30 % 2 14 3068
Entity #9 | Chains: 2
Proteasome subunit beta type-7 protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21431
95 % 2 4 19306
90 % 2 14 3603
70 % 2 14 3497
50 % 260 294 58
40 % 260 294 77
30 % 260 294 94

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures