Sequence Similarity Clusters for the Entities in PDB 6EPD

Entity #1 | Chains: A
Proteasome subunit alpha type-6 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 40 517
95 % 19 40 646
90 % 19 40 673
70 % 19 40 726
50 % 273 306 54
40 % 273 307 69
30 % 1919 2172 3
Entity #10 | Chains: 3
Proteasome subunit beta type-3 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 40 511
95 % 19 40 636
90 % 19 40 663
70 % 19 40 715
50 % 270 303 59
40 % 270 304 72
30 % 270 304 88
Entity #11 | Chains: 4
Proteasome subunit beta type-2 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 31 797
95 % 19 40 641
90 % 19 40 669
70 % 19 40 722
50 % 19 40 779
40 % 269 303 77
30 % 269 303 92
Entity #12 | Chains: 5
Proteasome subunit beta type-5 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22629
95 % 2 4 20339
90 % 2 13 4150
70 % 2 13 4063
50 % 2 13 3937
40 % 2 13 3745
30 % 2 13 3418
Entity #13 | Chains: 6
Proteasome subunit beta type-1 protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22801
95 % 2 4 20473
90 % 2 14 3677
70 % 2 14 3622
50 % 2 14 3522
40 % 270 303 76
30 % 270 304 87
Entity #14 | Chains: 7
Proteasome subunit beta type-4 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22799
95 % 2 4 20472
90 % 2 14 3676
70 % 2 14 3621
50 % 2 14 3521
40 % 2 14 3380
30 % 2 14 3118
Entity #15 | Chains: W
26S proteasome subunit S5a protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22800
95 % 2 14 4498
90 % 2 14 4538
70 % 2 14 4441
50 % 2 14 4264
40 % 2 14 4038
30 % 2 14 3662
Entity #16 | Chains: V
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 14 protein, length: 310 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 25 2051
95 % 2 25 2352
90 % 2 25 2411
70 % 2 25 2405
50 % 9 45 1303
40 % 9 45 1290
30 % 9 45 1286
Entity #17 | Chains: T
Proteasome 26S subunit, non-ATPase 8 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22798
95 % 2 4 20471
90 % 2 13 5149
70 % 2 13 5015
50 % 2 13 4779
40 % 2 13 4514
30 % 2 13 4056
Entity #18 | Chains: Y
RCG28037 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 26 1831
95 % 6 26 2147
90 % 6 26 2202
70 % 6 26 2209
50 % 6 28 2105
40 % 6 28 2083
30 % 6 28 1979
Entity #19 | Chains: Z
26S proteasome non-ATPase regulatory subunit 2 protein, length: 908 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22630
95 % 2 26 2225
90 % 2 26 2283
70 % 2 26 2293
50 % 2 26 2282
40 % 8 44 1325
30 % 8 44 1323
Entity #2 | Chains: B
Proteasome subunit alpha type-2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 40 518
95 % 19 40 647
90 % 19 40 674
70 % 19 40 727
50 % 273 307 51
40 % 1102 1249 3
30 % 1920 2172 3
Entity #20 | Chains: N
26S proteasome non-ATPase regulatory subunit 1 protein, length: 953 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 25661
95 % 2 25 2378
90 % 2 25 2444
70 % 2 25 2437
50 % 2 25 2411
40 % 9 44 1301
30 % 9 44 1298
Entity #21 | Chains: S
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 3 protein, length: 530 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 25662
95 % 2 24 2516
90 % 2 24 2585
70 % 2 24 2570
50 % 2 24 2550
40 % 2 24 2502
30 % 8 42 1389
Entity #22 | Chains: P
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 12 protein, length: 456 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 24175
95 % 2 25 2402
90 % 2 25 2469
70 % 2 25 2464
50 % 2 25 2446
40 % 8 44 1337
30 % 8 44 1320
Entity #23 | Chains: Q
26S proteasome non-ATPase regulatory subunit 11 protein, length: 422 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 25 2088
95 % 2 25 2389
90 % 2 25 2455
70 % 4 27 2250
50 % 4 27 2252
40 % 10 46 1282
30 % 10 46 1275
Entity #24 | Chains: R
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 6 protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 25 2050
95 % 2 25 2406
90 % 2 25 2473
70 % 2 25 2470
50 % 2 25 2383
40 % 2 25 2355
30 % 8 44 1322
Entity #25 | Chains: U
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 7 (Predicted) protein, length: 320 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 25660
95 % 2 14 4650
90 % 2 14 4688
70 % 2 14 4583
50 % 2 14 4385
40 % 3 28 2181
30 % 3 28 2059
Entity #26 | Chains: O
26S proteasome non-ATPase regulatory subunit 13 protein, length: 376 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 23677
95 % 2 25 2346
90 % 2 25 2406
70 % 2 25 2400
50 % 2 25 2379
40 % 2 25 2351
30 % 8 45 1285
Entity #27 | Chains: H
26S proteasome regulatory subunit 7 protein, length: 433 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 24 2184
95 % 2 24 2487
90 % 2 24 2549
70 % 9 43 1316
50 % 9 43 1371
40 % 46 218 244
30 % 46 218 259
Entity #28 | Chains: I
26S proteasome regulatory subunit 4 protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 14 4114
95 % 2 14 4463
90 % 2 14 4507
70 % 3 27 2243
50 % 3 27 2247
40 % 3 27 2219
30 % 3 27 2094
Entity #29 | Chains: K
26S proteasome regulatory subunit 6B protein, length: 418 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 24 2155
95 % 2 24 2456
90 % 2 24 2515
70 % 9 43 1334
50 % 15 59 1003
40 % 47 218 244
30 % 47 218 259
Entity #3 | Chains: C
Proteasome subunit alpha type-4 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 26 913
95 % 19 40 645
90 % 19 40 672
70 % 19 40 725
50 % 273 307 50
40 % 1103 1249 3
30 % 1921 2172 3
Entity #30 | Chains: L
Proteasome 26S subunit, ATPase 6 protein, length: 403 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 24 2182
95 % 2 24 2496
90 % 2 24 2559
70 % 8 30 2001
50 % 16 73 777
40 % 48 218 244
30 % 48 218 259
Entity #31 | Chains: M
26S proteasome regulatory subunit 6A protein, length: 442 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 20682
95 % 2 24 2510
90 % 2 24 2577
70 % 9 43 1335
50 % 9 43 1375
40 % 49 218 244
30 % 49 218 259
Entity #32 | Chains: J
26S proteasome regulatory subunit 8 protein, length: 406 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 24 2152
95 % 2 24 2450
90 % 2 24 2511
70 % 9 43 1315
50 % 17 73 777
40 % 50 218 244
30 % 50 218 259
Entity #4 | Chains: D
Proteasome subunit alpha type-7 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21858
95 % 19 41 642
90 % 19 41 670
70 % 19 41 723
50 % 273 307 55
40 % 1104 1249 3
30 % 1922 2172 3
Entity #5 | Chains: E
Proteasome subunit alpha type-5 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21859
95 % 19 40 637
90 % 19 40 664
70 % 19 40 716
50 % 274 308 46
40 % 1105 1249 3
30 % 1923 2172 3
Entity #6 | Chains: F
Proteasome subunit alpha type-1 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 25 954
95 % 19 41 638
90 % 19 41 665
70 % 19 41 717
50 % 273 307 52
40 % 273 307 70
30 % 1924 2172 3
Entity #7 | Chains: G
Proteasome subunit alpha type-3 protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 37 498
95 % 20 41 526
90 % 20 41 556
70 % 20 41 590
50 % 274 307 40
40 % 274 307 56
30 % 1925 2172 3
Entity #8 | Chains: 1
Proteasome subunit beta type-6 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 25699
95 % 2 4 22743
90 % 2 14 3656
70 % 2 14 3601
50 % 2 14 3502
40 % 2 14 3363
30 % 2 14 3104
Entity #9 | Chains: 2
Proteasome subunit beta type-7 protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21857
95 % 2 4 19718
90 % 2 14 3618
70 % 2 14 3566
50 % 270 304 57
40 % 270 304 73
30 % 270 304 89

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures