Sequence Similarity Clusters for the Entities in PDB 6EPD

Entity #1 | Chains: A
Proteasome subunit alpha type-6 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 48 430
95 % 27 48 550
90 % 27 48 577
70 % 27 48 617
50 % 282 315 56
40 % 282 316 74
30 % 1983 2236 3
Entity #10 | Chains: 3
Proteasome subunit beta type-3 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 47 432
95 % 26 47 552
90 % 26 47 580
70 % 26 47 619
50 % 278 311 59
40 % 278 312 77
30 % 278 312 92
Entity #11 | Chains: 4
Proteasome subunit beta type-2 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 38 608
95 % 26 47 547
90 % 26 47 574
70 % 26 47 614
50 % 26 47 657
40 % 277 311 80
30 % 277 311 94
Entity #12 | Chains: 5
Proteasome subunit beta type-5 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 23068
95 % 2 4 20707
90 % 9 20 2083
70 % 9 20 2105
50 % 9 20 2119
40 % 9 20 2092
30 % 9 20 1984
Entity #13 | Chains: 6
Proteasome subunit beta type-1 protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 23252
95 % 2 4 20847
90 % 9 21 1935
70 % 9 21 1957
50 % 9 21 1985
40 % 278 311 79
30 % 278 312 89
Entity #14 | Chains: 7
Proteasome subunit beta type-4 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 23250
95 % 2 4 20846
90 % 9 21 1934
70 % 9 21 1956
50 % 9 21 1984
40 % 9 21 1965
30 % 9 21 1888
Entity #15 | Chains: W
26S proteasome subunit S5a protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 23251
95 % 9 21 2999
90 % 9 21 3051
70 % 9 21 3018
50 % 9 21 2958
40 % 9 21 2871
30 % 9 21 2661
Entity #16 | Chains: V
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 14 protein, length: 310 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 32 1537
95 % 9 32 1796
90 % 9 32 1834
70 % 9 32 1860
50 % 16 52 1175
40 % 16 52 1168
30 % 16 52 1161
Entity #17 | Chains: T
Proteasome 26S subunit, non-ATPase 8 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 23249
95 % 2 4 20845
90 % 9 20 3303
70 % 9 20 3247
50 % 9 20 3154
40 % 9 20 3066
30 % 9 20 2827
Entity #18 | Chains: Y
RCG28037 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 33 1401
95 % 13 33 1651
90 % 13 33 1687
70 % 13 33 1710
50 % 13 35 1691
40 % 13 35 1686
30 % 13 35 1650
Entity #19 | Chains: Z
26S proteasome non-ATPase regulatory subunit 2 protein, length: 908 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 23069
95 % 9 33 1754
90 % 9 33 1787
70 % 9 33 1803
50 % 9 33 1830
40 % 15 51 1197
30 % 15 51 1190
Entity #2 | Chains: B
Proteasome subunit alpha type-2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 47 431
95 % 26 47 551
90 % 26 47 578
70 % 26 47 618
50 % 281 315 54
40 % 1141 1288 3
30 % 1984 2236 3
Entity #20 | Chains: N
26S proteasome non-ATPase regulatory subunit 1 protein, length: 953 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 26153
95 % 9 32 1818
90 % 9 32 1858
70 % 9 32 1883
50 % 9 32 1904
40 % 16 51 1177
30 % 16 51 1169
Entity #21 | Chains: S
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 3 protein, length: 530 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 26154
95 % 9 31 1910
90 % 9 31 1956
70 % 9 31 1975
50 % 9 31 2003
40 % 9 31 1987
30 % 15 49 1241
Entity #22 | Chains: P
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 12 protein, length: 456 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 24652
95 % 9 32 1839
90 % 9 32 1880
70 % 9 32 1910
50 % 9 32 1927
40 % 15 51 1207
30 % 15 51 1188
Entity #23 | Chains: Q
26S proteasome non-ATPase regulatory subunit 11 protein, length: 422 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 32 1560
95 % 9 32 1827
90 % 9 32 1868
70 % 11 34 1763
50 % 11 34 1788
40 % 17 53 1163
30 % 17 53 1151
Entity #24 | Chains: R
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 6 protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 32 1536
95 % 9 32 1843
90 % 9 32 1884
70 % 9 32 1915
50 % 9 32 1880
40 % 9 32 1873
30 % 15 51 1189
Entity #25 | Chains: U
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 7 (Predicted) protein, length: 320 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 26152
95 % 9 21 3024
90 % 9 21 3082
70 % 9 21 3047
50 % 9 21 2983
40 % 10 35 1741
30 % 10 35 1698
Entity #26 | Chains: O
26S proteasome non-ATPase regulatory subunit 13 protein, length: 376 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 24144
95 % 9 32 1790
90 % 9 32 1828
70 % 9 32 1852
50 % 9 32 1874
40 % 9 32 1868
30 % 15 52 1157
Entity #27 | Chains: H
26S proteasome regulatory subunit 7 protein, length: 433 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 31 1621
95 % 9 31 1894
90 % 9 31 1941
70 % 16 50 1173
50 % 16 50 1231
40 % 87 259 187
30 % 87 259 208
Entity #28 | Chains: I
26S proteasome regulatory subunit 4 protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 21 2691
95 % 9 21 2989
90 % 9 21 3042
70 % 10 34 1753
50 % 10 34 1781
40 % 10 34 1776
30 % 10 34 1731
Entity #29 | Chains: K
26S proteasome regulatory subunit 6B protein, length: 418 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 31 1601
95 % 9 31 1876
90 % 9 31 1919
70 % 16 50 1189
50 % 57 159 271
40 % 88 259 187
30 % 88 259 208
Entity #3 | Chains: C
Proteasome subunit alpha type-4 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 26 936
95 % 26 47 549
90 % 26 47 576
70 % 26 47 616
50 % 281 315 53
40 % 1142 1288 3
30 % 1985 2236 3
Entity #30 | Chains: L
Proteasome 26S subunit, ATPase 6 protein, length: 403 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 31 1619
95 % 9 31 1897
90 % 9 31 1944
70 % 15 37 1608
50 % 58 159 271
40 % 89 259 187
30 % 89 259 208
Entity #31 | Chains: M
26S proteasome regulatory subunit 6A protein, length: 442 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21074
95 % 9 31 1908
90 % 9 31 1953
70 % 16 50 1190
50 % 16 50 1236
40 % 90 259 187
30 % 90 259 208
Entity #32 | Chains: J
26S proteasome regulatory subunit 8 protein, length: 406 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 31 1596
95 % 9 31 1870
90 % 9 31 1915
70 % 16 50 1171
50 % 59 159 271
40 % 91 259 187
30 % 91 259 208
Entity #4 | Chains: D
Proteasome subunit alpha type-7 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22276
95 % 26 48 548
90 % 26 48 575
70 % 26 48 615
50 % 281 315 57
40 % 1143 1288 3
30 % 1986 2236 3
Entity #5 | Chains: E
Proteasome subunit alpha type-5 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22277
95 % 26 47 542
90 % 26 47 569
70 % 26 47 609
50 % 282 316 51
40 % 1144 1288 3
30 % 1987 2236 3
Entity #6 | Chains: F
Proteasome subunit alpha type-1 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 25 979
95 % 26 48 543
90 % 26 48 570
70 % 26 48 610
50 % 281 315 55
40 % 281 315 75
30 % 1988 2236 3
Entity #7 | Chains: G
Proteasome subunit alpha type-3 protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 22 935
95 % 27 48 438
90 % 27 48 478
70 % 27 48 509
50 % 282 315 41
40 % 282 315 57
30 % 1989 2236 3
Entity #8 | Chains: 1
Proteasome subunit beta type-6 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 26191
95 % 2 4 23165
90 % 9 21 1927
70 % 9 21 1944
50 % 9 21 1973
40 % 9 21 1955
30 % 9 21 1881
Entity #9 | Chains: 2
Proteasome subunit beta type-7 protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22275
95 % 2 4 20074
90 % 9 21 1931
70 % 9 21 1951
50 % 278 312 58
40 % 278 312 76
30 % 278 312 91

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures