Sequence Similarity Clusters for the Entities in PDB 6EPD

Entity #1 | Chains: A
Proteasome subunit alpha type-6 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 29 755
95 % 19 33 802
90 % 19 33 833
70 % 19 33 871
50 % 259 285 48
40 % 259 286 57
30 % 1821 2025 3
Entity #10 | Chains: 3
Proteasome subunit beta type-3 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22054
95 % 19 33 809
90 % 19 33 839
70 % 19 33 877
50 % 259 285 49
40 % 259 286 58
30 % 259 286 76
Entity #11 | Chains: 4
Proteasome subunit beta type-2 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22131
95 % 19 33 810
90 % 19 33 840
70 % 19 33 878
50 % 19 33 925
40 % 258 285 61
30 % 258 285 78
Entity #12 | Chains: 5
Proteasome subunit beta type-5 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 20551
95 % 2 4 18050
90 % 2 13 3873
70 % 2 13 3813
50 % 2 13 3704
40 % 2 13 3570
30 % 2 13 3330
Entity #13 | Chains: 6
Proteasome subunit beta type-1 protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21088
95 % 2 4 18395
90 % 2 14 3429
70 % 2 14 3388
50 % 2 14 3297
40 % 259 285 60
30 % 259 286 75
Entity #14 | Chains: 7
Proteasome subunit beta type-4 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 20552
95 % 2 4 18051
90 % 2 14 3422
70 % 2 14 3385
50 % 2 14 3293
40 % 2 14 3203
30 % 2 14 3000
Entity #15 | Chains: W
26S proteasome subunit S5a protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 18714
95 % 2 14 4066
90 % 2 14 4103
70 % 2 14 4050
50 % 2 14 3917
40 % 2 14 3753
30 % 2 14 3501
Entity #16 | Chains: V
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 14 protein, length: 310 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 19 2345
95 % 2 19 2998
90 % 2 19 3043
70 % 2 19 3011
50 % 2 32 1733
40 % 2 32 1746
30 % 2 32 1709
Entity #17 | Chains: T
Proteasome 26S subunit, non-ATPase 8 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 19017
95 % 2 4 17005
90 % 2 13 4798
70 % 2 13 4702
50 % 2 13 4502
40 % 2 13 4289
30 % 2 13 3943
Entity #18 | Chains: Y
RCG28037 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 22 1861
95 % 6 22 2434
90 % 6 22 2499
70 % 6 22 2489
50 % 6 22 2482
40 % 6 22 2452
30 % 6 22 2335
Entity #19 | Chains: Z
26S proteasome non-ATPase regulatory subunit 2 protein, length: 908 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 16683
95 % 2 20 2786
90 % 2 20 2833
70 % 2 20 2810
50 % 2 20 2773
40 % 2 20 2725
30 % 2 20 2562
Entity #2 | Chains: B
Proteasome subunit alpha type-2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21201
95 % 19 33 807
90 % 19 33 837
70 % 19 33 875
50 % 259 286 45
40 % 1046 1165 3
30 % 1822 2025 3
Entity #20 | Chains: N
26S proteasome non-ATPase regulatory subunit 1 protein, length: 953 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 16662
95 % 2 18 3079
90 % 2 18 3124
70 % 2 18 3091
50 % 2 18 3037
40 % 2 18 2986
30 % 2 18 2798
Entity #21 | Chains: S
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 3 protein, length: 530 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 17338
95 % 2 18 3095
90 % 2 18 3141
70 % 2 18 3108
50 % 2 18 3049
40 % 2 18 2997
30 % 2 18 2812
Entity #22 | Chains: P
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 12 protein, length: 456 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 17853
95 % 2 19 2970
90 % 2 19 3011
70 % 2 19 2977
50 % 2 19 2936
40 % 2 32 1730
30 % 2 32 1694
Entity #23 | Chains: Q
26S proteasome non-ATPase regulatory subunit 11 protein, length: 422 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 19 2329
95 % 2 19 2975
90 % 2 19 3018
70 % 4 21 2740
50 % 4 21 2704
40 % 4 34 1622
30 % 4 34 1596
Entity #24 | Chains: R
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 6 protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 18574
95 % 2 19 2980
90 % 2 19 3024
70 % 2 19 2990
50 % 2 19 2952
40 % 2 19 2898
30 % 2 32 1699
Entity #25 | Chains: U
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 7 (Predicted) protein, length: 320 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 19536
95 % 2 14 4117
90 % 2 14 4153
70 % 2 14 4093
50 % 2 14 3955
40 % 3 28 1997
30 % 3 28 1925
Entity #26 | Chains: O
26S proteasome non-ATPase regulatory subunit 13 protein, length: 376 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 18730
95 % 2 19 2984
90 % 2 19 3028
70 % 2 19 2995
50 % 2 19 2956
40 % 2 19 2900
30 % 2 33 1654
Entity #27 | Chains: H
26S proteasome regulatory subunit 7 protein, length: 433 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 18065
95 % 2 14 4023
90 % 2 14 4062
70 % 2 14 4011
50 % 2 26 2136
40 % 2 26 2138
30 % 2 26 2052
Entity #28 | Chains: I
26S proteasome regulatory subunit 4 protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 14 3258
95 % 2 14 4016
90 % 2 14 4055
70 % 2 26 2153
50 % 2 26 2141
40 % 2 26 2141
30 % 6 146 355
Entity #29 | Chains: K
26S proteasome regulatory subunit 6B protein, length: 418 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 18237
95 % 2 14 4035
90 % 2 14 4074
70 % 2 14 4023
50 % 2 26 2143
40 % 5 120 452
30 % 7 146 355
Entity #3 | Chains: C
Proteasome subunit alpha type-4 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 20618
95 % 19 33 800
90 % 19 33 831
70 % 19 33 869
50 % 259 286 44
40 % 1047 1165 3
30 % 1823 2025 3
Entity #30 | Chains: L
Proteasome 26S subunit, ATPase 6 protein, length: 403 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 18 2469
95 % 2 18 3118
90 % 2 18 3164
70 % 2 18 3141
50 % 3 48 1113
40 % 6 120 452
30 % 8 146 355
Entity #31 | Chains: M
26S proteasome regulatory subunit 6A protein, length: 442 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 17994
95 % 2 14 4015
90 % 2 14 4054
70 % 2 14 4005
50 % 2 26 2140
40 % 7 120 452
30 % 9 146 355
Entity #32 | Chains: J
26S proteasome regulatory subunit 8 protein, length: 406 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 18 2467
95 % 2 18 3116
90 % 2 18 3162
70 % 2 30 1807
50 % 4 48 1113
40 % 8 120 452
30 % 10 146 355
Entity #4 | Chains: D
Proteasome subunit alpha type-7 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 20768
95 % 19 34 801
90 % 19 34 832
70 % 19 34 870
50 % 259 286 47
40 % 1048 1165 3
30 % 1824 2025 3
Entity #5 | Chains: E
Proteasome subunit alpha type-5 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21070
95 % 19 33 805
90 % 19 33 835
70 % 19 33 873
50 % 260 287 42
40 % 1049 1165 3
30 % 1825 2025 3
Entity #6 | Chains: F
Proteasome subunit alpha type-1 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 20553
95 % 19 34 799
90 % 19 34 830
70 % 19 34 868
50 % 259 286 46
40 % 259 286 59
30 % 1826 2025 3
Entity #7 | Chains: G
Proteasome subunit alpha type-3 protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 20743
95 % 20 34 610
90 % 20 34 640
70 % 20 34 685
50 % 56 70 351
40 % 56 70 368
30 % 1827 2025 3
Entity #8 | Chains: 1
Proteasome subunit beta type-6 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21124
95 % 2 4 18423
90 % 2 14 3432
70 % 2 14 3390
50 % 2 14 3299
40 % 2 14 3207
30 % 2 14 3004
Entity #9 | Chains: 2
Proteasome subunit beta type-7 protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 20282
95 % 2 4 17862
90 % 2 14 3420
70 % 2 14 3381
50 % 259 286 43
40 % 259 286 56
30 % 259 286 74

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures