Sequence Similarity Clusters for the Entities in PDB 6EPD

Entity #1 | Chains: A
Proteasome subunit alpha type-6 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 33 674
95 % 19 33 830
90 % 19 33 858
70 % 19 33 897
50 % 259 285 63
40 % 259 286 78
30 % 1821 2025 3
Entity #10 | Chains: 3
Proteasome subunit beta type-3 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 33 670
95 % 19 33 824
90 % 19 33 851
70 % 19 33 888
50 % 259 285 60
40 % 259 286 76
30 % 259 286 95
Entity #11 | Chains: 4
Proteasome subunit beta type-2 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 31 764
95 % 19 33 823
90 % 19 33 850
70 % 19 33 887
50 % 19 33 940
40 % 258 285 82
30 % 258 285 100
Entity #12 | Chains: 5
Proteasome subunit beta type-5 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21756
95 % 2 4 19548
90 % 2 13 3984
70 % 2 13 3908
50 % 2 13 3808
40 % 2 13 3618
30 % 2 13 3317
Entity #13 | Chains: 6
Proteasome subunit beta type-1 protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21755
95 % 2 4 19547
90 % 2 14 3530
70 % 2 14 3478
50 % 2 14 3395
40 % 259 285 81
30 % 259 286 94
Entity #14 | Chains: 7
Proteasome subunit beta type-4 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21924
95 % 2 4 19675
90 % 2 14 3536
70 % 2 14 3481
50 % 2 14 3398
40 % 2 14 3260
30 % 2 14 3020
Entity #15 | Chains: W
26S proteasome subunit S5a protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21925
95 % 2 14 4321
90 % 2 14 4366
70 % 2 14 4265
50 % 2 14 4118
40 % 2 14 3894
30 % 2 14 3552
Entity #16 | Chains: V
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 14 protein, length: 310 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 19 2708
95 % 2 19 3038
90 % 2 19 3089
70 % 2 19 3035
50 % 2 32 1759
40 % 2 32 1748
30 % 2 32 1709
Entity #17 | Chains: T
Proteasome 26S subunit, non-ATPase 8 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21923
95 % 2 4 19674
90 % 2 13 4959
70 % 2 13 4822
50 % 2 13 4607
40 % 2 13 4343
30 % 2 13 3924
Entity #18 | Chains: Y
RCG28037 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 22 2109
95 % 6 22 2415
90 % 6 22 2490
70 % 6 22 2490
50 % 6 22 2468
40 % 6 22 2420
30 % 6 22 2272
Entity #19 | Chains: Z
26S proteasome non-ATPase regulatory subunit 2 protein, length: 908 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21757
95 % 2 20 2883
90 % 2 20 2943
70 % 2 20 2904
50 % 2 20 2867
40 % 2 32 1749
30 % 2 32 1710
Entity #2 | Chains: B
Proteasome subunit alpha type-2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 33 671
95 % 19 33 822
90 % 19 33 849
70 % 19 33 886
50 % 259 286 59
40 % 1046 1165 3
30 % 1822 2025 3
Entity #20 | Chains: N
26S proteasome non-ATPase regulatory subunit 1 protein, length: 953 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 24691
95 % 2 18 3377
90 % 2 18 3438
70 % 2 18 3317
50 % 2 18 3298
40 % 3 31 1798
30 % 3 31 1753
Entity #21 | Chains: S
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 3 protein, length: 530 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 24692
95 % 2 18 3379
90 % 2 18 3440
70 % 2 18 3374
50 % 2 18 3299
40 % 2 18 3181
30 % 2 18 2939
Entity #22 | Chains: P
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 12 protein, length: 456 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 23261
95 % 2 19 3116
90 % 2 19 3170
70 % 2 19 3117
50 % 2 19 3069
40 % 2 32 1761
30 % 2 32 1726
Entity #23 | Chains: Q
26S proteasome non-ATPase regulatory subunit 11 protein, length: 422 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 19 2802
95 % 2 19 3125
90 % 2 19 3177
70 % 4 21 2861
50 % 4 21 2769
40 % 4 34 1687
30 % 4 34 1657
Entity #24 | Chains: R
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 6 protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 19 2707
95 % 2 19 3124
90 % 2 19 3176
70 % 2 19 3121
50 % 2 19 2985
40 % 2 19 2909
30 % 2 32 1708
Entity #25 | Chains: U
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 7 (Predicted) protein, length: 320 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 24690
95 % 2 14 4471
90 % 2 14 4513
70 % 2 14 4400
50 % 2 14 4235
40 % 3 28 2091
30 % 3 28 1978
Entity #26 | Chains: O
26S proteasome non-ATPase regulatory subunit 13 protein, length: 376 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22778
95 % 2 19 3037
90 % 2 19 3088
70 % 2 19 3034
50 % 2 19 2984
40 % 2 19 2908
30 % 2 33 1677
Entity #27 | Chains: H
26S proteasome regulatory subunit 7 protein, length: 433 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 14 3889
95 % 2 14 4241
90 % 2 14 4286
70 % 2 26 2238
50 % 2 26 2228
40 % 2 26 2219
30 % 2 26 2092
Entity #28 | Chains: I
26S proteasome regulatory subunit 4 protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 14 3941
95 % 2 14 4286
90 % 2 14 4333
70 % 2 26 2249
50 % 2 26 2239
40 % 2 26 2218
30 % 2 26 2091
Entity #29 | Chains: K
26S proteasome regulatory subunit 6B protein, length: 418 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22777
95 % 2 14 4366
90 % 2 14 4411
70 % 2 14 4300
50 % 2 26 2259
40 % 5 104 531
30 % 5 104 536
Entity #3 | Chains: C
Proteasome subunit alpha type-4 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 26 866
95 % 19 33 827
90 % 19 33 855
70 % 19 33 893
50 % 259 286 57
40 % 1047 1165 3
30 % 1823 2025 3
Entity #30 | Chains: L
Proteasome 26S subunit, ATPase 6 protein, length: 403 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 18 2872
95 % 2 18 3183
90 % 2 18 3238
70 % 2 18 3193
50 % 3 48 1166
40 % 6 104 531
30 % 6 104 536
Entity #31 | Chains: M
26S proteasome regulatory subunit 6A protein, length: 442 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 19705
95 % 2 14 4114
90 % 2 14 4161
70 % 2 14 4085
50 % 2 26 2247
40 % 7 104 531
30 % 7 104 536
Entity #32 | Chains: J
26S proteasome regulatory subunit 8 protein, length: 406 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 18 3078
95 % 2 18 3378
90 % 2 18 3439
70 % 2 30 1930
50 % 4 48 1166
40 % 8 104 531
30 % 8 104 536
Entity #4 | Chains: D
Proteasome subunit alpha type-7 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21020
95 % 19 34 825
90 % 19 34 853
70 % 19 34 890
50 % 259 286 61
40 % 1048 1165 3
30 % 1824 2025 3
Entity #5 | Chains: E
Proteasome subunit alpha type-5 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21021
95 % 19 33 814
90 % 19 33 839
70 % 19 33 895
50 % 260 287 55
40 % 1049 1165 3
30 % 1825 2025 3
Entity #6 | Chains: F
Proteasome subunit alpha type-1 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 25 893
95 % 19 34 829
90 % 19 34 857
70 % 19 34 896
50 % 259 286 62
40 % 259 286 83
30 % 1826 2025 3
Entity #7 | Chains: G
Proteasome subunit alpha type-3 protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 30 645
95 % 20 34 620
90 % 20 34 645
70 % 20 34 695
50 % 260 286 43
40 % 260 286 61
30 % 1827 2025 3
Entity #8 | Chains: 1
Proteasome subunit beta type-6 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 24731
95 % 2 4 18950
90 % 2 14 3516
70 % 2 14 3460
50 % 2 14 3379
40 % 2 14 3246
30 % 2 14 3008
Entity #9 | Chains: 2
Proteasome subunit beta type-7 protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21019
95 % 2 4 18951
90 % 2 14 3485
70 % 2 14 3426
50 % 259 286 58
40 % 259 286 77
30 % 259 286 96

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures