Sequence Similarity Clusters for the Entities in PDB 6BGO

Entity #1 | Chains: A,C,D,E,F,G,H,I,J,K,L,M,N,O
Proteasome subunit alpha protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 19 98
95 % 17 19 130
90 % 17 19 135
70 % 17 19 151
50 % 20 22 166
40 % 20 22 179
30 % 20 22 184
Entity #2 | Chains: P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c
Proteasome subunit beta protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 19 104
95 % 17 19 137
90 % 17 19 141
70 % 17 19 162
50 % 18 20 180
40 % 18 20 194
30 % 18 20 203
Entity #3 | Chains: d,e,f,g,h,i,j
Bacterial proteasome activator protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 1897
95 % 1 3 2455
90 % 1 3 2517
70 % 1 3 2546
50 % 1 3 2559
40 % 1 3 2591
30 % 1 3 2565

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures