Sequence Similarity Clusters for the Entities in PDB 6BGO

Entity #1 | Chains: A,C,D,E,F,G,H,I,J,K,L,M,N,O
Proteasome subunit alpha protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 19 99
95 % 17 19 132
90 % 17 19 135
70 % 17 19 150
50 % 20 22 165
40 % 20 22 179
30 % 20 22 185
Entity #2 | Chains: P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c
Proteasome subunit beta protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 19 105
95 % 17 19 138
90 % 17 19 141
70 % 17 19 161
50 % 18 20 181
40 % 18 20 195
30 % 18 20 202
Entity #3 | Chains: d,e,f,g,h,i,j
Bacterial proteasome activator protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 1893
95 % 1 3 2444
90 % 1 3 2510
70 % 1 3 2534
50 % 1 3 2553
40 % 1 3 2576
30 % 1 3 2546

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures