Sequence Similarity Clusters for the Entities in PDB 6BGO

Entity #1 | Chains: A,C,D,E,F,G,H,I,J,K,L,M,N,O
Proteasome subunit alpha protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 19 109
95 % 17 19 133
90 % 17 19 138
70 % 17 19 160
50 % 17 19 191
40 % 17 19 204
30 % 17 19 228
Entity #2 | Chains: P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c
Proteasome subunit beta protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 18 115
95 % 17 19 136
90 % 17 19 142
70 % 17 19 166
50 % 18 20 200
40 % 18 20 208
30 % 643 683 9
Entity #3 | Chains: d,e,f,g,h,i,j
Bacterial proteasome activator protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 2112
95 % 1 3 2420
90 % 1 3 2480
70 % 5 7 1128
50 % 5 7 1206
40 % 5 7 1208
30 % 5 7 1197

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures