Sequence Similarity Clusters for the Entities in PDB 6BGO

Entity #1 | Chains: A,C,D,E,F,G,H,I,J,K,L,M,N,O
Proteasome subunit alpha protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 19 97
95 % 17 19 126
90 % 17 19 129
70 % 17 19 147
50 % 17 19 176
40 % 17 19 189
30 % 17 19 207
Entity #2 | Chains: P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c
Proteasome subunit beta protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 18 108
95 % 17 19 130
90 % 17 19 133
70 % 17 19 155
50 % 18 20 183
40 % 18 20 194
30 % 536 562 10
Entity #3 | Chains: d,e,f,g,h,i,j
Bacterial proteasome activator protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 1937
95 % 1 3 2241
90 % 1 3 2300
70 % 5 7 1051
50 % 5 7 1122
40 % 5 7 1134
30 % 5 7 1125

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures