Sequence Similarity Clusters for the Entities in PDB 6BGO

Entity #1 | Chains: A,C,D,E,F,G,H,I,J,K,L,M,N,O
Proteasome subunit alpha protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 19 103
95 % 17 19 131
90 % 17 19 134
70 % 17 19 157
50 % 17 19 188
40 % 17 19 199
30 % 17 19 221
Entity #2 | Chains: P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c
Proteasome subunit beta protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 18 112
95 % 17 19 135
90 % 17 19 139
70 % 17 19 163
50 % 18 20 194
40 % 18 20 204
30 % 559 599 10
Entity #3 | Chains: d,e,f,g,h,i,j
Bacterial proteasome activator protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 2056
95 % 1 3 2365
90 % 1 3 2428
70 % 5 7 1103
50 % 5 7 1182
40 % 5 7 1178
30 % 5 7 1171

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures